PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G26860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 232aa MW: 25399.4 Da PI: 8.791 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.5 | 7.5e-29 | 37 | 88 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eCl+NhAa+ Ggh+vDGCgEfmp+ +t + l CaACgCHR+FHRr+++ ONIVA01G26860.1 37 RCRYHECLRNHAAASGGHVVDGCGEFMPA----STEEPLACAACGCHRSFHRRDPS 88 79**************************9....5668****************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MELSEHEEDA GDVGGGCSSP PTPPHRVLTS AAPETIRCRY HECLRNHAAA SGGHVVDGCG 60 EFMPASTEEP LACAACGCHR SFHRRDPSPG RAGAARLLQL HLPASINSRA PPALLLPPAA 120 AASKQGLPFP GYGTPSGGTG TTTASSSDER LRPSPVQPRR RSRTTFTREQ KEQMLAFAER 180 VGWRIQRQEE ATVEHFCAQV GVRRQALKVW MHNNKHSFKQ KQQQENRQEQ QQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-40 | ZF-HD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G26860.1 |