PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G01950.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB_related

Protein Properties

Length: 560aa MW: 60592.5 Da PI: 6.4665

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G01950.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.6e-17	412	455	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++ ONIVA01G01950.2 412 RRSFSEEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 455 6789****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MALHLTRPFL RPSPPSPPPP RPTRRSSRAH CLAPSASARG PSFRRPYTSV LVVPTGVGAA 60 VGGFAGDALP VARALGAVAD CVISHPNVLN AAMLYWPMPN TLYVEGYALD RFAEGSWALQ 120 PVHQNKVGLV LDSGIEEELR LRHLQVADAA RASLGLPVVE YIVTDTPLEI KTWFDPKCGK 180 STGSVGNSDS LLRAVEALVN RSDVNAVAVV ARFPDDDPED SDCYREGKGV DLLAGVEAII 240 SHLIVKKFKI PAAHAPAVLP PVLSLSVSPR SAAEEIGHTF LPCVLAGLSN APQYVMRRNG 300 NMDNGCIVAS DVDSVILPKD ACGGDGTIAF ARTATNNKPL IITVQENETV LDDTPDKFNI 360 EALNVQNYWE AIGVIAAHKA GLQVSSQPPP RLISEHLPAG DPPSPLSRSR KRRSFSEEED 420 ELLLKLHALL GNRWSLIAGR LPGRTDKEVM NHWNSKLMDS TIEHPPSLHD DEHRRRRRRL 480 RSEAHDERGA KHPGHNSSSS SKDVNGDECT VADDASSCNH QDDNRAVAEL NLELTLSTPC 540 IYLLLGQDRE DGSKSNQGLI

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MALHLTRPFL RPSPPSPPPP RPTRRSSRAH CLAPSASARG PSFRRPYTSV LVVPTGVGAA  60
VGGFAGDALP VARALGAVAD CVISHPNVLN AAMLYWPMPN TLYVEGYALD RFAEGSWALQ  120
PVHQNKVGLV LDSGIEEELR LRHLQVADAA RASLGLPVVE YIVTDTPLEI KTWFDPKCGK  180
STGSVGNSDS LLRAVEALVN RSDVNAVAVV ARFPDDDPED SDCYREGKGV DLLAGVEAII  240
SHLIVKKFKI PAAHAPAVLP PVLSLSVSPR SAAEEIGHTF LPCVLAGLSN APQYVMRRNG  300
NMDNGCIVAS DVDSVILPKD ACGGDGTIAF ARTATNNKPL IITVQENETV LDDTPDKFNI  360
EALNVQNYWE AIGVIAAHKA GLQVSSQPPP RLISEHLPAG DPPSPLSRSR KRRSFSEEED  420
ELLLKLHALL GNRWSLIAGR LPGRTDKEVM NHWNSKLMDS TIEHPPSLHD DEHRRRRRRL  480
RSEAHDERGA KHPGHNSSSS SKDVNGDECT VADDASSCNH QDDNRAVAEL NLELTLSTPC  540
IYLLLGQDRE DGSKSNQGLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	409	414	SRKRRS
2	474	479	RRRRRR
3	474	481	RRRRRRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-09	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G01950.2