PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA01G01950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 560aa MW: 60592.5 Da PI: 6.4665 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.6e-17 | 412 | 455 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++ ONIVA01G01950.1 412 RRSFSEEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 455 6789******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 560 aa Download sequence |
MALHLTRPFL RPSPPSPPPP RPTRRSSRAH CLAPSASARG PSFRRPYTSV LVVPTGVGAA 60 VGGFAGDALP VARALGAVAD CVISHPNVLN AAMLYWPMPN TLYVEGYALD RFAEGSWALQ 120 PVHQNKVGLV LDSGIEEELR LRHLQVADAA RASLGLPVVE YIVTDTPLEI KTWFDPKCGK 180 STGSVGNSDS LLRAVEALVN RSDVNAVAVV ARFPDDDPED SDCYREGKGV DLLAGVEAII 240 SHLIVKKFKI PAAHAPAVLP PVLSLSVSPR SAAEEIGHTF LPCVLAGLSN APQYVMRRNG 300 NMDNGCIVAS DVDSVILPKD ACGGDGTIAF ARTATNNKPL IITVQENETV LDDTPDKFNI 360 EALNVQNYWE AIGVIAAHKA GLQVSSQPPP RLISEHLPAG DPPSPLSRSR KRRSFSEEED 420 ELLLKLHALL GNRWSLIAGR LPGRTDKEVM NHWNSKLMDS TIEHPPSLHD DEHRRRRRRL 480 RSEAHDERGA KHPGHNSSSS SKDVNGDECT VADDASSCNH QDDNRAVAEL NLELTLSTPC 540 IYLLLGQDRE DGSKSNQGLI |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 409 | 414 | SRKRRS |
2 | 474 | 479 | RRRRRR |
3 | 474 | 481 | RRRRRRLR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-09 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA01G01950.1 |