PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G00560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 24600.7 Da PI: 9.8372 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.4 | 6e-09 | 40 | 108 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P a+ + +++ ++ + Le+A YIk+L+ ONIVA01G00560.1 40 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 108 56899*********************555**************76666666****************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MKSRKNSTTS TKAAGSCHTS SSGGGGGGGN CYSSSSSKME RKDVEKNRRL HMKGLCLKLS 60 SLIPAAAPRR HHHHYSTSSS SSPPSSTKEA VTQLDHLEQA AAYIKQLKGR IDELKKRKQQ 120 AAALTTSTSN GGGGGMPVVE VRCQDGTLDV VVVSEAIGEE RERERERAVR LHEVIGVLEE 180 EGAEVVNASF SVVGDKIFYT LHSQALCSRI GLDASRVSHR LRNLLLQY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 7e-19 | bHLH family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA01G00560.1 |