PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G10585.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 181aa    MW: 21070.4 Da    PI: 10.0725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G10585.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.9e-061663254
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r+  n rE+ RR r+++ f+ L +++ +      +Kl       +A+ Y+ +L
  AT1G10585.1 16 REQRNLREKDRRMRMKHLFSILSSHVSPT-----RKLPVPHLIDQATSYMIQL 63
                 7889**********************886.....5777777777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-111181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1411463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRAREIGEG NSSSLREQRN LREKDRRMRM KHLFSILSSH VSPTRKLPVP HLIDQATSYM  60
IQLKENVNYL KEKKRTLLQG ELGNLYEGSF LLPKLSIRSR DSTIEMNLIM DLNMKRVMLH  120
ELVSIFEEEG AQVMSANLQN LNDRTTYTII AQAIISRIGI DPSRIEERVR KIIYGYIYFE  180
A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKDR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1864783240.0
Genevisible263210_at1e-139
Expression AtlasAT1G10585-
AtGenExpressAT1G10585-
ATTED-IIAT1G10585-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G10585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G10585, AT1G22190, AT1G01720, AT1G52880, AT1G52890, AT1G53170, AT1G74930, AT1G77450
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G10585
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3168610.0AK316861.1 Arabidopsis thaliana AT1G10585 mRNA, partial cds, clone: RAFL05-21-F23.
GenBankAY0509590.0AY050959.1 Arabidopsis thaliana unknown protein (At1g10585) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_563873.21e-129basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotF4I4E11e-130BH167_ARATH; Transcription factor bHLH167
TrEMBLA0A178WJI71e-128A0A178WJI7_ARATH; Uncharacterized protein
STRINGAT1G10585.11e-129(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Representative plantOGRP13451147
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Kiba T,Aoki K,Sakakibara H,Mizuno T
    Arabidopsis response regulator, ARR22, ectopic expression of which results in phenotypes similar to the wol cytokinin-receptor mutant.
    Plant Cell Physiol., 2004. 45(8): p. 1063-77
    [PMID:15356332]
  3. Baerson SR, et al.
    Detoxification and transcriptome response in Arabidopsis seedlings exposed to the allelochemical benzoxazolin-2(3H)-one.
    J. Biol. Chem., 2005. 280(23): p. 21867-81
    [PMID:15824099]
  4. Vanderauwera S, et al.
    Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis.
    Plant Physiol., 2005. 139(2): p. 806-21
    [PMID:16183842]
  5. Tran LS, et al.
    Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis.
    Plant J., 2007. 49(1): p. 46-63
    [PMID:17233795]
  6. Krishnaswamy SS, et al.
    Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana.
    BMC Plant Biol., 2008. 8: p. 91
    [PMID:18783601]
  7. Inz
    A subcellular localization compendium of hydrogen peroxide-induced proteins.
    Plant Cell Environ., 2012. 35(2): p. 308-20
    [PMID:21443605]
  8. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  9. Lumba S, et al.
    A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis.
    Dev. Cell, 2014. 29(3): p. 360-72
    [PMID:24823379]