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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA01G00250.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | NAC | ||||||||
| Protein Properties | Length: 335aa MW: 37176.4 Da PI: 6.4456 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 160.7 | 5.6e-50 | 24 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
lppGfrFhPtdeel+ +yL k++++ ++++ vi+evdiyk++Pw+Lp + + +++ ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++
ONIVA01G00250.1 24 LPPGFRFHPTDEELLLHYLGKRAAAAPCPA-PVIAEVDIYKYNPWELPaMaVFGESDGEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKPI 116
79***************************9.89***************5334455666************************************ PP
NAM 93 lskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
+++++ g+kk Lvfy+gr pkg+kt+W+mheyrl
ONIVA01G00250.1 117 SISETQQtvlLGVKKALVFYRGRPPKGTKTSWIMHEYRL 155
99844444559**************************98 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 335 aa Download sequence |
MMTIDLQLPA AACGDHHTAA GAGLPPGFRF HPTDEELLLH YLGKRAAAAP CPAPVIAEVD 60 IYKYNPWELP AMAVFGESDG EWYFFSPRDR KYPNGVRPNR AAGSGYWKAT GTDKPISISE 120 TQQTVLLGVK KALVFYRGRP PKGTKTSWIM HEYRLANAAS SSSSYTSNMK QLASSSSSSS 180 SSASMRLDEW VLCRIYKKKE ANQQLQHYID MMMDDDNDDE HNLQVQQQAQ SHRMPRPPSI 240 SDYLLDYSDD LPPSTDQTPS LHLGFTAVNE GNNKRHKTME EYYSISISTA DMLHASSSTS 300 NNKSTQINFS SIFEPQTPAA AGHQLMSSHN DDTSI |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G04070.1 | 5e-71 | NAC family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA01G00250.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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