PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G10570.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 454aa MW: 48649.5 Da PI: 8.2342

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G10570.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.4	3.8e-11	69	93	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p OGLUM12G10570.1 69 EPDCSYYMRTGLCRFGMTCKFNHPP 93 789********************97 PP
2	zf-CCCH	38.8	1.6e-12	114	138	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ OGLUM12G10570.1 114 QPECQYYLKTGTCKFGATCKFHHPR 138 799********************96 PP
3	zf-CCCH	31	4.3e-10	160	184	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ OGLUM12G10570.1 160 EKECAYYLRTGQCKFASTCKFHHPQ 184 679********************97 PP
4	zf-CCCH	39.5	9.4e-13	320	345	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ OGLUM12G10570.1 320 DQPECQFYMKTGDCKFGAVCKFHHPK 345 689*********************96 PP
5	zf-CCCH	37.5	4e-12	365	391	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ OGLUM12G10570.1 365 PGEPVCTFYSRYGICKFGPNCKFDHPM 391 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAAGAGAGGG GGEGGGNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES 60 TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY 120 LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCKF 180 HHPQPSNTMV AVRNSMYSPG QSATSPGQHT YPGAVTNWTL SRSASFIASP RWPGHSGYAQ 240 VIVPQGLVQV PGWNPYAAQM GSSSPDDQQR TPVTTQYYGS RQSETGGMGD HGMYQSYQGG 300 SVPVGVYTVQ GENIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERLVP APNCALNSLG 360 LPLRPGEPVC TFYSRYGICK FGPNCKFDHP MGTLMYGSAT SPRDDVSSMH YQLSPSPGHP 420 GILLDGGSGR SHRVPQSDSQ QIPSGDGNSE REAS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAAGAGAGGG GGEGGGNGGG TSPGGVSAAA PAIGPHHLGV AAAEEAMWQM TLGGGESMES  60
TPYPERIGEP DCSYYMRTGL CRFGMTCKFN HPPNRKLAVA AARMNGEYPY RVGQPECQYY  120
LKTGTCKFGA TCKFHHPREK AALANRVQLN VLGYPMRPNE KECAYYLRTG QCKFASTCKF  180
HHPQPSNTMV AVRNSMYSPG QSATSPGQHT YPGAVTNWTL SRSASFIASP RWPGHSGYAQ  240
VIVPQGLVQV PGWNPYAAQM GSSSPDDQQR TPVTTQYYGS RQSETGGMGD HGMYQSYQGG  300
SVPVGVYTVQ GENIFPERPD QPECQFYMKT GDCKFGAVCK FHHPKERLVP APNCALNSLG  360
LPLRPGEPVC TFYSRYGICK FGPNCKFDHP MGTLMYGSAT SPRDDVSSMH YQLSPSPGHP  420
GILLDGGSGR SHRVPQSDSQ QIPSGDGNSE REAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-155	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G10570.1