PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G05450.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 561aa    MW: 59652.1 Da    PI: 4.6242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G05450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.48.2e-25281641127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atksgy 82 
                      lppG+ F+Pt ee +++yL++ ++gk++++ e+  ++ +d+y   P  L++        +   +w+f s+r+++++     +kr++r +++ g+
  OGLUM12G05450.1  28 LPPGVYFNPTREEAMHHYLNRWIAGKTIPEMEAgfVAGADVYGDGPDALRRrhrpgYWCNYVYKWFFLSHRKRQSSrrttGNKRAERvVAAGGR 121
                      79*************************777664459999**********85345542222445899999998887744423458888667799* PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      Wk     k+vl  +g   g +++Lvfy+ ++ k +kt+W+m+ey+
  OGLUM12G05450.1 122 WKVEQG-KKVLG-GGGGGGERDSLVFYSSNSTKESKTSWIMEEYT 164
                      **6544.68888.88899**************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    
MDVDPPPLPL PPPPPPPATP QQNTAVELPP GVYFNPTREE AMHHYLNRWI AGKTIPEMEA  60
GFVAGADVYG DGPDALRRRH RPGYWCNYVY KWFFLSHRKR QSSRRTTGNK RAERVVAAGG  120
RWKVEQGKKV LGGGGGGGER DSLVFYSSNS TKESKTSWIM EEYTSSVADG EEGRMESVLC  180
KIYLSPRAPA GEKRALFGED GVAVGPDGRK RNARVTVLAT LFDDVATLLG QPVAAAPPLP  240
APGDQLGHGH FDDVAARFGQ VAVAALPASG DLGHGYFDDD AAALFGQVAM APAPAPGHHQ  300
QGNVVAEALP ESGYLGHYHH DGHLAQAAAP EQDHYLGYHS HDAHVAEATP EQGYLGHHQG  360
HLAAAAADQD YHDDAHGDLG HDQGHFAAAL TPEECDEIVG AYEFHPEMVQ MLSMGFAVPD  420
EQLVPQLLDA TGGGYDMASS ATAAAAAAPT PRIRPNAAEA MAATATAETM PPPLDAVAAE  480
LFAPPRGLPP ELAFSALPSV QQEPSCDDDD NFGEVVAEAM PPLIGENAGV DAGSDEPLPD  540
LSGIMPELDF GHDFFSNQRR E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-15NAC family protein