PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G55210.1 | ||||||||
Common Name | anac063, NAC063, T26I12.90 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 31823.7 Da PI: 6.1276 | ||||||||
Description | NAC domain containing protein 63 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.9 | 5.2e-33 | 11 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknra...........tksgyWka 85 lppGf+F P+dee++++yLk+ +g+++ l +v i+ v+iy+++P++L +++++ ++kew+ ++r+k + ++++r+ t+ gyW+a AT3G55210.1 11 LPPGFKFVPNDEEVIHCYLKPYSDGNTNVLLHVpIHLVNIYESNPQTLSEEFQKgNDKEWFIITERNKVDQGLSQTKRVgygakrqkrvdTNGGYWHA 108 79*************************9998989**************965544277899999999999986666666556666666666******** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t +++ + ++ +v k+ L++y g+ ++g+ktdW+m+ey+l AT3G55210.1 109 TVAAQKINA-GDGVVRNKRPLAYYVGKPSEGVKTDWLMQEYSL 150 ********9.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-39 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.683 | 11 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 12 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MSPPSTIAYV LPPGFKFVPN DEEVIHCYLK PYSDGNTNVL LHVPIHLVNI YESNPQTLSE 60 EFQKGNDKEW FIITERNKVD QGLSQTKRVG YGAKRQKRVD TNGGYWHATV AAQKINAGDG 120 VVRNKRPLAY YVGKPSEGVK TDWLMQEYSL DHSSHNNDKD YTLCKIYLTP QATKMNKEVG 180 EEKKKQKKGE AVVSVAPVEA LEEQLPCNVE YHQPLAPLDS CQPQPHDLAY QQQQFCPGPL 240 DSYQPQPHDM ENQQPHNEKL KKEEDVEQLD LHQPDQGKGC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-18 | 11 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-18 | 11 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-18 | 11 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-18 | 11 | 167 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 7e-18 | 11 | 167 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 7e-18 | 11 | 167 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 7e-18 | 11 | 167 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18410223 | 0.0 | ||||
Genevisible | 251694_s_at | 2e-77 | ||||
Expression Atlas | AT3G55210 | - | ||||
AtGenExpress | AT3G55210 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G55210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G55210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493652 | 0.0 | AB493652.1 Arabidopsis thaliana At3g55210 mRNA for hypothetical protein, partial cds, clone: RAAt3g55210. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191081.1 | 0.0 | NAC domain containing protein 63 | ||||
TrEMBL | A0A384KY99 | 0.0 | A0A384KY99_ARATH; NAC063 | ||||
TrEMBL | Q9M3C9 | 0.0 | Q9M3C9_ARATH; NAC domain containing protein 63 | ||||
STRING | AT3G55210.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Link Out ? help Back to Top | |
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Phytozome | AT3G55210.1 |
Entrez Gene | 824687 |
iHOP | AT3G55210 |
wikigenes | AT3G55210 |
Publications ? help Back to Top | |||
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