PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G05210.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 417aa MW: 42372.1 Da PI: 6.1836

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G05210.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.7	2e-42	105	250	3	125
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgk 89 +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + ++s ssasn++ ++ OGLUM12G05210.1 105 LAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRAS 198 689*****************************************************************88766666665566666666666666 PP TCP 90 aaksaa.kskksqksaasalnlakesr...............akarararer 125 ++ a +++++q++ +++l ++++ a a +r+r+r OGLUM12G05210.1 199 PFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 250 6666666888888888888888875445666666666666555555554444 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDHGGGGGGG GAAPSSSNSG GGSGGGGGGG GGRENHPHHP FYYSGPAAAA AAAAAAQQQQ 60 QTFMGALAIT PVVAEQPQGS SGGGEKKVVA PTTPAAAGAA ATTTLAKRPS KDRHTKVDGR 120 GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSSLNIS 180 IRSGAASASS ASNPNRASPF PALALHPHHQ QHDVSAMLGY HHHLLPPPQQ QQESPQDPGG 240 AGAFMRKRYR EDLFKEDDDR QDPSAPKARE QQPTTPQAAA AAAAAAMWAV APNTAAPGGA 300 FWMLPVSASS AAAARPTEQP MWSFAGGGGG AATVQAPLQF MSTRVNYPGS AGAGMSDTNL 360 GMLAALNAYN RGGAGDQQPQ QQPEMDQQGR NDDDDDDGDD SGDEDNGGAN NNNNSSQ

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDHGGGGGGG GAAPSSSNSG GGSGGGGGGG GGRENHPHHP FYYSGPAAAA AAAAAAQQQQ  60
QTFMGALAIT PVVAEQPQGS SGGGEKKVVA PTTPAAAGAA ATTTLAKRPS KDRHTKVDGR  120
GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSSLNIS  180
IRSGAASASS ASNPNRASPF PALALHPHHQ QHDVSAMLGY HHHLLPPPQQ QQESPQDPGG  240
AGAFMRKRYR EDLFKEDDDR QDPSAPKARE QQPTTPQAAA AAAAAAMWAV APNTAAPGGA  300
FWMLPVSASS AAAARPTEQP MWSFAGGGGG AATVQAPLQF MSTRVNYPGS AGAGMSDTNL  360
GMLAALNAYN RGGAGDQQPQ QQPEMDQQGR NDDDDDDGDD SGDEDNGGAN NNNNSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-44	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G05210.1