PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G04560.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 900aa MW: 99981.5 Da PI: 8.4446

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G04560.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.3	2.7e-25	90	185	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 +Wt+++v++Li+a+++++e+ ++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d OGLUM12G04560.2 90 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 183 7*******************9877778889999********************************************5499999999988 PP trihelix 84 ql 85 + OGLUM12G04560.2 184 CM 185 77 PP

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence
MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHRQHAKNGM 60 SDDEEHGVNE DATDSQSGKG KKGAAWQRMK WTDSMVKLLI TAVSYTGEDP GADSGAGKRN 120 SAIMQKKGKW KAISKVMGER GCSVSPQQCE DKFNDLNKRY KRLTDILGRG TACKIVENHA 180 LLDCMSNLSD KMKDDARKIL SSKHLFYEEM CSYHNNNRVS LPEDPALQRS LQLALRCKDE 240 HDLRRGTSGD ADEDDQSVDS DSEEENDEEH YTLQGDKSAL PMHKRLRHMT DQEDVGFGNS 300 SSSHGCSRRS DSHGISLDIN KAFPDGTNLA LAQKDLATQS ADLEEQRLQI EVQAVYLAKQ 360 RLKWERFSKN KDRELEQMRL ENEKMRLENK RLELEVRHKD RVPPTLVQPL PLVLSFPSSS 420 SSSSDPHASS ASASLPRRPP LAAAGATPER GEAEMSFRSI VRDVRDGFGS LSRRGFEVRL 480 VGHRRGRSHS AVHELRDGHA AAAAAADVVQ SSCWANLPPE LLRDVIERLE ASEAAWPSRK 540 NVVACAAVCR TWRDMCREIV KNPEFCGKIT FPVSLKQPGP RDGAIQCFIK RDKSTQTYNL 600 YLCLSSAVLV ESGKFLLSAK RYSRATCTEY TIFMSADNTS RSSNMYIGKL RSNLLGTKFV 660 IYDTQPPCNT ANVSQSGKTS RRFYSRKVSP KNPSSTYSIA QVSYELNVLG TRGPRRMNCV 720 MHSIPASSLE AGGTVPCQPD SVLARSLDES FGSISFSKSS IMDRAIRFSS SRYSDISVGG 780 PMVGGQALGD SDESKERPLI LRNKAPRWHE QLQCWCLNFK GRVTVASVKN FQLVAATQPA 840 AGAPTPSQPA PPPPPDHDKV ILQFGKVAKD MFTMDYRYPL SAFQAFAICL SSFDTKLACE

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence

MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHRQHAKNGM  60
SDDEEHGVNE DATDSQSGKG KKGAAWQRMK WTDSMVKLLI TAVSYTGEDP GADSGAGKRN  120
SAIMQKKGKW KAISKVMGER GCSVSPQQCE DKFNDLNKRY KRLTDILGRG TACKIVENHA  180
LLDCMSNLSD KMKDDARKIL SSKHLFYEEM CSYHNNNRVS LPEDPALQRS LQLALRCKDE  240
HDLRRGTSGD ADEDDQSVDS DSEEENDEEH YTLQGDKSAL PMHKRLRHMT DQEDVGFGNS  300
SSSHGCSRRS DSHGISLDIN KAFPDGTNLA LAQKDLATQS ADLEEQRLQI EVQAVYLAKQ  360
RLKWERFSKN KDRELEQMRL ENEKMRLENK RLELEVRHKD RVPPTLVQPL PLVLSFPSSS  420
SSSSDPHASS ASASLPRRPP LAAAGATPER GEAEMSFRSI VRDVRDGFGS LSRRGFEVRL  480
VGHRRGRSHS AVHELRDGHA AAAAAADVVQ SSCWANLPPE LLRDVIERLE ASEAAWPSRK  540
NVVACAAVCR TWRDMCREIV KNPEFCGKIT FPVSLKQPGP RDGAIQCFIK RDKSTQTYNL  600
YLCLSSAVLV ESGKFLLSAK RYSRATCTEY TIFMSADNTS RSSNMYIGKL RSNLLGTKFV  660
IYDTQPPCNT ANVSQSGKTS RRFYSRKVSP KNPSSTYSIA QVSYELNVLG TRGPRRMNCV  720
MHSIPASSLE AGGTVPCQPD SVLARSLDES FGSISFSKSS IMDRAIRFSS SRYSDISVGG  780
PMVGGQALGD SDESKERPLI LRNKAPRWHE QLQCWCLNFK GRVTVASVKN FQLVAATQPA  840
AGAPTPSQPA PPPPPDHDKV ILQFGKVAKD MFTMDYRYPL SAFQAFAICL SSFDTKLACE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-88	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G04560.2