PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G04560.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 913aa MW: 101241 Da PI: 8.3499

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G04560.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.3	2.7e-25	90	185	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 +Wt+++v++Li+a+++++e+ ++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d OGLUM12G04560.1 90 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLD 183 7*******************9877778889999********************************************5499999999988 PP trihelix 84 ql 85 + OGLUM12G04560.1 184 CM 185 77 PP

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence
MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHRQHAKNGM 60 SDDEEHGVNE DATDSQSGKG KKGAAWQRMK WTDSMVKLLI TAVSYTGEDP GADSGAGKRN 120 SAIMQKKGKW KAISKVMGER GCSVSPQQCE DKFNDLNKRY KRLTDILGRG TACKIVENHA 180 LLDCMSNLSD KMKDDARKIL SSKHLFYEEM CSYHNNNRVS LPEDPALQRS LQLALRCKDE 240 HDLRRGTSGD ADEDDQSVDS DSEEENDEEH YTLQGDKSAL PMHKRLRHMT DQEDVGFGNS 300 SSSHGCSRRS DSHGISLDIN KAFPDGTNLA LAQKDLATQS ADLEEQRLQI EVQAVYLAKQ 360 RLKWERFSKN KDRELEQMRL ENEKMRLENK RLELELGTFS ICFMALYQSS ASSRVPPTLV 420 QPLPLVLSFP SSSSSSSDPH ASSASASLPR RPPLAAAGAT PERGEAEMSF RSIVRDVRDG 480 FGSLSRRGFE VRLVGHRRGR SHSAVHELRD GHAAAAAAAD VVQSSCWANL PPELLRDVIE 540 RLEASEAAWP SRKNVVACAA VCRTWRDMCR EIVKNPEFCG KITFPVSLKQ PGPRDGAIQC 600 FIKRDKSTQT YNLYLCLSSA VLVESGKFLL SAKRYSRATC TEYTIFMSAD NTSRSSNMYI 660 GKLRSNLLGT KFVIYDTQPP CNTANVSQSG KTSRRFYSRK VSPKNPSSTY SIAQVSYELN 720 VLGTRGPRRM NCVMHSIPAS SLEAGGTVPC QPDSVLARSL DESFGSISFS KSSIMDRAIR 780 FSSSRYSDIS VGGPMVGGQA LGDSDESKER PLILRNKAPR WHEQLQCWCL NFKGRVTVAS 840 VKNFQLVAAT QPAAGAPTPS QPAPPPPPDH DKVILQFGKV AKDMFTMDYR YPLSAFQAFA 900 ICLSSFDTKL ACE

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence

MHAPNPGKQG FDHTQMPGNL SMHVNQSTDS DHLSEFQFGE LGKVDHHHHH HHRQHAKNGM  60
SDDEEHGVNE DATDSQSGKG KKGAAWQRMK WTDSMVKLLI TAVSYTGEDP GADSGAGKRN  120
SAIMQKKGKW KAISKVMGER GCSVSPQQCE DKFNDLNKRY KRLTDILGRG TACKIVENHA  180
LLDCMSNLSD KMKDDARKIL SSKHLFYEEM CSYHNNNRVS LPEDPALQRS LQLALRCKDE  240
HDLRRGTSGD ADEDDQSVDS DSEEENDEEH YTLQGDKSAL PMHKRLRHMT DQEDVGFGNS  300
SSSHGCSRRS DSHGISLDIN KAFPDGTNLA LAQKDLATQS ADLEEQRLQI EVQAVYLAKQ  360
RLKWERFSKN KDRELEQMRL ENEKMRLENK RLELELGTFS ICFMALYQSS ASSRVPPTLV  420
QPLPLVLSFP SSSSSSSDPH ASSASASLPR RPPLAAAGAT PERGEAEMSF RSIVRDVRDG  480
FGSLSRRGFE VRLVGHRRGR SHSAVHELRD GHAAAAAAAD VVQSSCWANL PPELLRDVIE  540
RLEASEAAWP SRKNVVACAA VCRTWRDMCR EIVKNPEFCG KITFPVSLKQ PGPRDGAIQC  600
FIKRDKSTQT YNLYLCLSSA VLVESGKFLL SAKRYSRATC TEYTIFMSAD NTSRSSNMYI  660
GKLRSNLLGT KFVIYDTQPP CNTANVSQSG KTSRRFYSRK VSPKNPSSTY SIAQVSYELN  720
VLGTRGPRRM NCVMHSIPAS SLEAGGTVPC QPDSVLARSL DESFGSISFS KSSIMDRAIR  780
FSSSRYSDIS VGGPMVGGQA LGDSDESKER PLILRNKAPR WHEQLQCWCL NFKGRVTVAS  840
VKNFQLVAAT QPAAGAPTPS QPAPPPPPDH DKVILQFGKV AKDMFTMDYR YPLSAFQAFA  900
ICLSSFDTKL ACE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	8e-88	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G04560.1