PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G04490.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 562aa    MW: 61519.7 Da    PI: 4.4417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G04490.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS169.33e-521755593373
             GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                      +lLl+ A av++gd+  a+a+++rl +l a  +g+       p+  la yf+++L+ r+++      +a p+s+ ++     +  a+++++e++
  OGLUM12G04490.1 175 DLLLAGAMAVDAGDAVHASAIMSRLDDLlADIAGRrsceatsPVDHLAYYFARGLKLRISG------AATPASSPPPPAANWSSPAYRMLQELT 262
                      689999*******************998766666456666679******************......3344444444445667789******** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa....sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                      P++kf+h+taNqaIlea++ +  vH+iDf++++G+QW +L+  La     R+++pp + +T v   +   + ++   ++ L++fAe+l++pf++
  OGLUM12G04490.1 263 PFVKFAHFTANQAILEATADDLDVHVIDFNVGEGVQWSSLMSDLAaagrHRSSKPPLFHLTDVIT-SGAGTPRTADARRWLSEFAESLHLPFRY 355
                      ********************************************9664447799*******9999.4458999999999*************** PP

             GRAS 179 nvlvakrledl..eleeLrvkp....gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh.nse..........sFl 254
                      + l++++ +d     +eL++         ++  +     ++   +++l+s  +  +L ++  l+Pk+v+++e e+++ +++          +F 
  OGLUM12G04490.1 356 TSLHVHDGDDDdeLHHELAMICngssSPPVILTCDD--TTTT-TNTPLRSrLKLILLGTITILQPKLVILIEDELSRiSKNppspslaappPFP 446
                      ***777555542222334332233323334444443..3332.23444441356689*****************999554489*********** PP

             GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                      e f++a+ +++a+++s+++ l + ++e ++++ + +g+e   vv  + ++ + r  +l+   +++e  G+++ ++s + ++q k+l   ++  g
  OGLUM12G04490.1 447 EFFSDAVAHFTAVMESTASCLVSYDDE-AWLSLRRVGEE---VVGPRVEDAVGRYGSLAGGAQMME--GLRAREVSGFSVAQGKMLAGLFG-GG 533
                      *****************8776554433.33332223433...344555555556666677778876..***********************.67 PP

             GRAS 349 yrve.eesgslvlgWkdrpLvsvSaW 373
                      + v  +e+g l l+Wk+rpL+svS W
  OGLUM12G04490.1 534 FGVVhQEKGRLALCWKSRPLISVSLW 559
                      876638899999************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
METMSYPCSL LIPFSTQFEE ISSSSLLLWS PQAEENPHEN ANMYEFDADH SHDQIHQDHQ  60
FLDMMVIQES ANEFDGNHSH DQIHQDHEFL ETMVIQESAN EFDGDHSHDQ IHQDHEFLEM  120
MAIQESANDL LQLQDDFSVP NADPLAASFE FDERLAVAGH ENGNVVAAQE ESAGDLLLAG  180
AMAVDAGDAV HASAIMSRLD DLLADIAGRR SCEATSPVDH LAYYFARGLK LRISGAATPA  240
SSPPPPAANW SSPAYRMLQE LTPFVKFAHF TANQAILEAT ADDLDVHVID FNVGEGVQWS  300
SLMSDLAAAG RHRSSKPPLF HLTDVITSGA GTPRTADARR WLSEFAESLH LPFRYTSLHV  360
HDGDDDDELH HELAMICNGS SSPPVILTCD DTTTTTNTPL RSRLKLILLG TITILQPKLV  420
ILIEDELSRI SKNPPSPSLA APPPFPEFFS DAVAHFTAVM ESTASCLVSY DDEAWLSLRR  480
VGEEVVGPRV EDAVGRYGSL AGGAQMMEGL RAREVSGFSV AQGKMLAGLF GGGFGVVHQE  540
KGRLALCWKS RPLISVSLWC PK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-16GRAS family protein