PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01420.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 626aa    MW: 68146.5 Da    PI: 6.845
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01420.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.26e-22129189359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  OGLUM12G01420.1 129 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 189
                      9************************9888889**********98776537899*****997 PP
2WRKY54.91.7e-17474528356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  OGLUM12G01420.1 474 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 528
                      9**************************99999********987.33322.2344443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TTPASHSTTA LAGDDECLPP GLTTTTTVSG  60
GGGRRRGRKR IRRDNDNLKL LQADDDQEVL AAAVHGDANA KPLPNFTKTS RRKQQTTTST  120
MVTTVPDFDG YQWRKYGQKQ IEGAMYPRSY YRCTNSTNQG CLAKKTVQRN GGGGAAGYTV  180
AYISEHTCKS IEPSLPPVIL DTTVRATNNH HPPAASSSCA AQSPAAAATS SSSDMMMTST  240
SSTSSETGNW SGQHGAYACR RQMIAADEEY CCSDTPATTT ASGSDGGNSS TCADQEIDLM  300
SGPIRSPLHI AADGNWVDDL LLVGIKEMKN SSNKRPLVAD QWHPSSVCCD HRAALREIAR  360
GQSLVTQLRA IVLPALHSDE RGDLAAQMLE GILDCSRKAI SELQLQLSSD SPHDDDGHLD  420
DKRRVRKIVS SSSDDDDHCS SKAAEDHNAK PLRQHKRRRF GDSVSLETPV PHYDGHQWRK  480
YGQKHINNSK HPRSYYRCTY RQEEKCKATK TVQQREDLHH ANSYNGDHPV MYTVVYYGQH  540
TCCKGPAASA DDHVVVEASQ ISTDSHCQSP GSSSSELQAA AHAGDSSQCS KISVTCSSSV  600
VVEDCNKLLD MLPAADELTT DVLNQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16573RRGRKRIRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-16WRKY family protein