PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G01400.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 370aa MW: 39682.4 Da PI: 7.9178

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G01400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	58.2	1.6e-18	122	186	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 +Dg++WrKYGqK + ++++rsYYrC+ + gCp++k v++ ++ + k++++ Y g+H+++ OGLUM12G01400.1 122 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 186 8***********************9887889****99876522226899*****995 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPILPSD NEQAKLALQL LGDILSCSDK 60 AISMLELGGD TNKLTNLVGG KRKGDKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP 120 HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY 180 GQHTCRGDGI ANPYVVDTAH HSMEPINQNE CNSPTLEHEA HEVQDEKFEN LCMFLVLDVE 240 LLRSAGVRGG GGEGAGGECG TAQQEGGAGA TLRDGATEKD SAREKRAPRP GGTMRVRGGH 300 AWVRRGLPTP DSGAGTADCG PERGVVRKRR DCGVAGDDGR AAAQARWSAS CGAARLGSAL 360 AVRDGAAPGV

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPILPSD NEQAKLALQL LGDILSCSDK  60
AISMLELGGD TNKLTNLVGG KRKGDKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP  120
HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY  180
GQHTCRGDGI ANPYVVDTAH HSMEPINQNE CNSPTLEHEA HEVQDEKFEN LCMFLVLDVE  240
LLRSAGVRGG GGEGAGGECG TAQQEGGAGA TLRDGATEKD SAREKRAPRP GGTMRVRGGH  300
AWVRRGLPTP DSGAGTADCG PERGVVRKRR DCGVAGDDGR AAAQARWSAS CGAARLGSAL  360
AVRDGAAPGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	2e-19	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G01400.1