PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G01270.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 875aa MW: 96234.6 Da PI: 9.1183

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G01270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	68.3	1.2e-21	642	703	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ OGLUM12G01270.1 642 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 703 8*************************99999***8761679***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence
MVKKQRKVSS GLLKRMAGRI ERWYHDEGFQ CAQVVGYNGN LDAGEVVCEV VEGDITKVEY 60 QFVEAMSSTA TPASLSLIGS FLNSITVKLH LRPGHIYNNG AGKQALKNID SLGLFSTVEV 120 EPRPDETNQG GVIVAIKLKE HDPKSAQVIT DWSIVSGSQG TPTLASIQPG GTVSFEHHDI 180 CGLKRSLIGS VTTSNLLNPE DDLSFKLEYA HPYLDGVDNR SRNRTFKISC FNSRKLSPIF 240 VAGPNMYEAP PIWSFTKQSK FTYGLVVEEI TTRDENNNIC THGSRQLPSG ALSMIGPPTT 300 LSGTGVDRMA FLQANITRDN TEFVNGATIG DRCIFQYSEQ SFLVGYRWIK ASVLEARTLF 360 NRHQLTVTKF INLNKQEKGP RKPPPAVLAL HGRYAGCVGD LPSYGAFALG GPHSVRGYGM 420 GELGASRNLL EVATELSVPI TVKNRHTQVY AFAEHGTDLG SSKDVKGNPT EFFRRVGHGS 480 SYGVGVKLGA VRAEYAVDHN AGTGAFFLRF ERNPGLNLRD LAVVKLTMEG AGRIPGMARH 540 ILPARMMVVN VRMGSKVMES TNAKRRAPIP TPSSSSPSSL PSETTRPPQN LRFFSETEMA 600 LDSVPSYPSD LGSSRARTPQ QQRVSPRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF 660 PRFYYRCTYK NDMKCPATKQ VQQKDTNDPP LFSVTYFNHH TCNSSSKIVG STPDSTVQSR 720 KAISICFNSH GQTGEQPTFL SSSASLLSPS MQSYSSNQQP DMNTYSRQFQ WADTSSSTSN 780 APVKMEADDY AEASASPSTT GALSRTLLPI GQSRCIESLT PSLDPLKGAK LLILLGTRAF 840 LLPRYMDSEI RAIMAQYMPL DNQGDVPNHS HHIEL

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence

MVKKQRKVSS GLLKRMAGRI ERWYHDEGFQ CAQVVGYNGN LDAGEVVCEV VEGDITKVEY  60
QFVEAMSSTA TPASLSLIGS FLNSITVKLH LRPGHIYNNG AGKQALKNID SLGLFSTVEV  120
EPRPDETNQG GVIVAIKLKE HDPKSAQVIT DWSIVSGSQG TPTLASIQPG GTVSFEHHDI  180
CGLKRSLIGS VTTSNLLNPE DDLSFKLEYA HPYLDGVDNR SRNRTFKISC FNSRKLSPIF  240
VAGPNMYEAP PIWSFTKQSK FTYGLVVEEI TTRDENNNIC THGSRQLPSG ALSMIGPPTT  300
LSGTGVDRMA FLQANITRDN TEFVNGATIG DRCIFQYSEQ SFLVGYRWIK ASVLEARTLF  360
NRHQLTVTKF INLNKQEKGP RKPPPAVLAL HGRYAGCVGD LPSYGAFALG GPHSVRGYGM  420
GELGASRNLL EVATELSVPI TVKNRHTQVY AFAEHGTDLG SSKDVKGNPT EFFRRVGHGS  480
SYGVGVKLGA VRAEYAVDHN AGTGAFFLRF ERNPGLNLRD LAVVKLTMEG AGRIPGMARH  540
ILPARMMVVN VRMGSKVMES TNAKRRAPIP TPSSSSPSSL PSETTRPPQN LRFFSETEMA  600
LDSVPSYPSD LGSSRARTPQ QQRVSPRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF  660
PRFYYRCTYK NDMKCPATKQ VQQKDTNDPP LFSVTYFNHH TCNSSSKIVG STPDSTVQSR  720
KAISICFNSH GQTGEQPTFL SSSASLLSPS MQSYSSNQQP DMNTYSRQFQ WADTSSSTSN  780
APVKMEADDY AEASASPSTT GALSRTLLPI GQSRCIESLT PSLDPLKGAK LLILLGTRAF  840
LLPRYMDSEI RAIMAQYMPL DNQGDVPNHS HHIEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-21	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G01270.1