PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01250.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 335aa    MW: 37253.5 Da    PI: 5.8178
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01250.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.62.5e-23141202259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dg++WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  OGLUM12G01250.1 141 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRdnrGCQATKQIQQKdNNDPPMFQVTYSNEHTCT 202
                      8***************************99999*******8751679*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MAVTESACLS YEQEAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HALRALNVAL  60
SVMNQPHASS SAAAAAVPVM SMIKAEAATP ANSSSPAADV AADNHVVGKP RRSSSAAKRR  120
RINGEEYKSS SWSQFTPVPH EDGFQWRKYG EKKIQGTHFT RSYFRCTYRD NRGCQATKQI  180
QQKDNNDPPM FQVTYSNEHT CTTTRLINNI NNPAALHNLT ANPNGHHDSD DDDTIFTKMI  240
KQEEQAAWLP PPPPADLATI SNNFDETPGL HVCQEVPPSS SNSSVISHYA DEFDHHQMLE  300
TTVMEEALGL GAYLDDPYFY DPNLLLIYES LMNCY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-20WRKY family protein