PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G00050.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 1706aa MW: 185144 Da PI: 7.429

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G00050.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	1573	1629	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve + d+++ ei+Y+geHnh+k OGLUM12G00050.2 1573 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 1629 9*************************************.*************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 1706 aa Download sequence
MSRSEHPMVA AARAALAHLQ LPLPPAPAGS NMDHHLLPHF LHRSPPSPCF LLLRTQHKPK 60 PPQPQLHLLL CTAFDSLAHS LQEVLDKHKP KLHLDTLFLH GNLPFAKVGV PPPPPPPAPL 120 LSPPSVSAHH QHQPATPTET ETEDTAANDS PPPRTLPVRL LNIPVDRLRS TLSTLSLTEL 180 IDLVPHLVAR SLPSPDTHPD KKKLFSVHHF FRYAEFEGKR FFEELDRDGD GQVTLEDLEV 240 AMRKRRLPRR YARDFLRRTR SNLFSKSIGW KQFLSLMEQK EPTILRAYTT LCLSKSGTLH 300 KNQILTSLKG AGLPANEDNA AAMLRYLNAD SEESISYSHF RNFMLLLPSE RLEDDPRNIW 360 FEAATLVAVP PPVEISTGSV LKSALAGGLA SALSTSVMHP IDSMKTRVQA SSLSFPDLIS 420 TLPQIGLRGL YRGSIPAILG QFSSHGLRTG IFEASKLVLK SVAPTLSDIQ VQSLSSFCST 480 ILGTAVRIPC EVLKQRLQAG IFNNVGEAIV GTMQKDGPKG FFRGTGATLC REVPFYVAGM 540 CLYAEAKKAA QHVLNRDLEP WETIAVGALS GGLAAVVTTP FDVMKTRMMT APPGTPVSMQ 600 LIVFSILRNE GPLGLFKGAI PRFFWIAPLG AMNFAGYELA KKAMIQTESD SADCNKENNI 660 SQNRRHVLDC QTPCEGKGAA TSKKRKNKPA GGFNLRKSIA WNPAFFTEQG VLDNTELSML 720 TGSQVKATRS PASGFSSTFS PLSRFGKSSN TSVLKEIGEN SRGKFPSKCL SAENKGRKLF 780 ASSKASEQDE RKALAGTQDK RSAKAIQKIP KKSEPSPSVV SRSRSTSSVT NVPKPTTRPA 840 TVTSECTHKV EGLPLKSKTE RSSVTKSSGP TIGKDMVPPT VTTICQETNG SGKCETFSPY 900 SQDNPSSSVV APARISAKPS ALRMPSPSVG FFTQGKASVS HSGTAQRNPE RCFSGNISSV 960 KPPSLPVQSA TSDSTPNVLA SSLPGVEDAT VCSLKQSLSE STVPYSEKSG NISYQEMPDD 1020 DFSLAGNGAT TELSFRDNDD GRNSMPNECS VALSVGQDLN AICCSSTEPA EDSCFLKVIC 1080 SSSEPSVGSN LTTSCISSPG CTPNDLNSQS KSDNGETAVD IENSLSGETS GTVCSSEGNN 1140 CTSATDSLRK SDSCHQQNML VQSIHCTDQM PQFDSSTGIK PSLAYSQLDS NNSLCSEVQL 1200 TSSEGPDIDS EMELDTDDSF TVEEPPLLHV GDECDHDYRS AECSHMNLAA PSPCVDQEAL 1260 AGNLTEKVDT ADGRTESHHC STQERRPILS EEQDTEDKIE FDTKLSSSEG ASSIERIKSV 1320 GKSRTNTISK DHLKNLVPFT EEWLAVMEAF GEEVLEQKTG AVQNSPTDKA APEPSPWSPV 1380 KRKAQDVGPF DCTKYSKNVR TKQQQQPTVL AIDSFCAALE SLIVSVLAPF NSTSFSPFDC 1440 IYQSLPVTAQ DFGTWCDMQS HKKVAAVKPV ASRPSSRLRS FSMLQEDSTA IDSPRVTSLE 1500 EIILRRTKAT RFTHPLSNSS TEIAATRLED SGTHTTCDQK KADTGKGACW DNLTVSQSVR 1560 KPNVSAKNSL SYDGYSWRKY GQKQVKGSEF PRSYYKCTHP TCPVKRKVEM TPDGRIAEIV 1620 YNGEHNHPKP HPPRKPTLST SVETLVATND AGLENKLEGC DQAIGSDAVV EALRGGCHCL 1680 DGFRNGNEIS DCKKRYAYAV IFIQEK

Sequence ? help Back to Top

Protein Sequence Length: 1706 aa Download sequence

MSRSEHPMVA AARAALAHLQ LPLPPAPAGS NMDHHLLPHF LHRSPPSPCF LLLRTQHKPK  60
PPQPQLHLLL CTAFDSLAHS LQEVLDKHKP KLHLDTLFLH GNLPFAKVGV PPPPPPPAPL  120
LSPPSVSAHH QHQPATPTET ETEDTAANDS PPPRTLPVRL LNIPVDRLRS TLSTLSLTEL  180
IDLVPHLVAR SLPSPDTHPD KKKLFSVHHF FRYAEFEGKR FFEELDRDGD GQVTLEDLEV  240
AMRKRRLPRR YARDFLRRTR SNLFSKSIGW KQFLSLMEQK EPTILRAYTT LCLSKSGTLH  300
KNQILTSLKG AGLPANEDNA AAMLRYLNAD SEESISYSHF RNFMLLLPSE RLEDDPRNIW  360
FEAATLVAVP PPVEISTGSV LKSALAGGLA SALSTSVMHP IDSMKTRVQA SSLSFPDLIS  420
TLPQIGLRGL YRGSIPAILG QFSSHGLRTG IFEASKLVLK SVAPTLSDIQ VQSLSSFCST  480
ILGTAVRIPC EVLKQRLQAG IFNNVGEAIV GTMQKDGPKG FFRGTGATLC REVPFYVAGM  540
CLYAEAKKAA QHVLNRDLEP WETIAVGALS GGLAAVVTTP FDVMKTRMMT APPGTPVSMQ  600
LIVFSILRNE GPLGLFKGAI PRFFWIAPLG AMNFAGYELA KKAMIQTESD SADCNKENNI  660
SQNRRHVLDC QTPCEGKGAA TSKKRKNKPA GGFNLRKSIA WNPAFFTEQG VLDNTELSML  720
TGSQVKATRS PASGFSSTFS PLSRFGKSSN TSVLKEIGEN SRGKFPSKCL SAENKGRKLF  780
ASSKASEQDE RKALAGTQDK RSAKAIQKIP KKSEPSPSVV SRSRSTSSVT NVPKPTTRPA  840
TVTSECTHKV EGLPLKSKTE RSSVTKSSGP TIGKDMVPPT VTTICQETNG SGKCETFSPY  900
SQDNPSSSVV APARISAKPS ALRMPSPSVG FFTQGKASVS HSGTAQRNPE RCFSGNISSV  960
KPPSLPVQSA TSDSTPNVLA SSLPGVEDAT VCSLKQSLSE STVPYSEKSG NISYQEMPDD  1020
DFSLAGNGAT TELSFRDNDD GRNSMPNECS VALSVGQDLN AICCSSTEPA EDSCFLKVIC  1080
SSSEPSVGSN LTTSCISSPG CTPNDLNSQS KSDNGETAVD IENSLSGETS GTVCSSEGNN  1140
CTSATDSLRK SDSCHQQNML VQSIHCTDQM PQFDSSTGIK PSLAYSQLDS NNSLCSEVQL  1200
TSSEGPDIDS EMELDTDDSF TVEEPPLLHV GDECDHDYRS AECSHMNLAA PSPCVDQEAL  1260
AGNLTEKVDT ADGRTESHHC STQERRPILS EEQDTEDKIE FDTKLSSSEG ASSIERIKSV  1320
GKSRTNTISK DHLKNLVPFT EEWLAVMEAF GEEVLEQKTG AVQNSPTDKA APEPSPWSPV  1380
KRKAQDVGPF DCTKYSKNVR TKQQQQPTVL AIDSFCAALE SLIVSVLAPF NSTSFSPFDC  1440
IYQSLPVTAQ DFGTWCDMQS HKKVAAVKPV ASRPSSRLRS FSMLQEDSTA IDSPRVTSLE  1500
EIILRRTKAT RFTHPLSNSS TEIAATRLED SGTHTTCDQK KADTGKGACW DNLTVSQSVR  1560
KPNVSAKNSL SYDGYSWRKY GQKQVKGSEF PRSYYKCTHP TCPVKRKVEM TPDGRIAEIV  1620
YNGEHNHPKP HPPRKPTLST SVETLVATND AGLENKLEGC DQAIGSDAVV EALRGGCHCL  1680
DGFRNGNEIS DCKKRYAYAV IFIQEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	7e-27	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G00050.2