PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G14080.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 787aa    MW: 82328.6 Da    PI: 6.5373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G14080.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.22.7e-1304167861374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevs 88 
                      lv+lLl+cA+ vs+gd+ +a + L  l+  asp gd+mqR+a++f+ ALaarl+  +s ++++ +p++++         s e+l++++++++++
  OGLUM11G14080.1 416 LVHLLLACADLVSKGDHPAALRHLHLLRRVASPLGDSMQRVASHFADALAARLSLLSSPTSASPSPRAAAAAApypfppSPETLKVYQILYQAC 509
                      68****************************************************9888888888888888777899****************** PP

             GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+       +++etg+ La++A++l+vpfef++ +
  OGLUM11G14080.1 510 PYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PPAAVRETGRHLASLAASLRVPFEFHAAA 599
                      *************************************************************....99*************************99 PP

             GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      a+rle l++ +L+ + gEalaVn v +lhr++  s +       +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+a++p
  OGLUM11G14080.1 600 ADRLERLRPAALHRRVGEALAVNAVNRLHRVP--SSH----LLPLLSMIRDQAPKIITLVEQEAAHNGPYFLGRFLEALHYYSAIFDSLDATFP 687
                      99*****************************9..333....4459************************************************* PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
                      +es +r+kvE+ ll++ei+nvvacegaer++rhe+le+Wr+ +e  GF++vpls  a+ q + ll  ++ +dgyr+ e+sg+l+lgW+dr++++
  OGLUM11G14080.1 688 AESTARMKVEQSLLAPEIRNVVACEGAERVARHERLERWRRLMEGRGFEAVPLSAAAVGQSQVLLGLYGaGDGYRLTEDSGCLLLGWQDRAIIA 781
                      ********************************************************************************************** PP

             GRAS 370 vSaWr 374
                      +SaWr
  OGLUM11G14080.1 782 ASAWR 786
                      ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    
MGTTTMLNAA DMAGGGAKLQ QQQAPTSPTA SVSESNIVAS TASADPEAND ALAGLQALRF  60
DGGGGGGGDI DDVEIQSPDI ALWESIFADQ IGVSGAGADF LLSMSSAAAS PRRDFMACSP  120
KRDYMVTTSS PKRDYMVTSS PKRDYMVSSP KREYMVTSPR REMATSPRRA TFSNLYTSSH  180
GGGGGGGHHL HHQSYVHGGG MEGGGGGHGA QPQYGGLAGH GKGKAQSPLH KVYINNVGGG  240
SGGGGVKSNT PSTLSCSSSY VVHGGESGLP SLPSMDPFLE EGYLGSYQLP EKAAGGVGGG  300
GGGDINGSGA SASVVTAPAS SQLLPTLSEC LAMPEPAAYR GGGDEVVAAA MAVAGELPVG  360
AFVQPELYYG GGGEFGGEGM TPPLQHQMAA DSSLHSMLGS VIQSEAEQEQ DSGLQLVHLL  420
LACADLVSKG DHPAALRHLH LLRRVASPLG DSMQRVASHF ADALAARLSL LSSPTSASPS  480
PRAAAAAAPY PFPPSPETLK VYQILYQACP YIKFAHFTAN QAIFEAFHGE DRVHVVDLDI  540
LQGYQWPAFL QALAARPGGP PTLRLTGVGH PPAAVRETGR HLASLAASLR VPFEFHAAAA  600
DRLERLRPAA LHRRVGEALA VNAVNRLHRV PSSHLLPLLS MIRDQAPKII TLVEQEAAHN  660
GPYFLGRFLE ALHYYSAIFD SLDATFPAES TARMKVEQSL LAPEIRNVVA CEGAERVARH  720
ERLERWRRLM EGRGFEAVPL SAAAVGQSQV LLGLYGAGDG YRLTEDSGCL LLGWQDRAII  780
AASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-91GRAS family protein