PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G13870.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 306aa    MW: 34919.4 Da    PI: 9.0585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G13870.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033108130223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C ++++++ +L  Hi+  H
  OGLUM11G13870.1 108 SCSVCWRVYPTSRLLSIHISEaH 130
                      6******************9888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MQQKPAAEAM EEELKGEAVG PRRPGLGLWL AARRRLAPDD PFFAAGDMER ELLAKQVALD  60
LSEDERYQLE RMEVASANAL LCPISGCGAH LDCLENFEDH YRTRHTASCS VCWRVYPTSR  120
LLSIHISEAH DSFFQAKVAR GFPMYECLVE GCGVKLKSYK SRQQHLLDKH QFPKSFEFFK  180
KARPSQRQRN KNQKQRQTVH KGDETSETLM DVDGKKSSRY MNSRYRPKQH DGKESKENEH  240
SSCKEAKNNE MEVDKQVDEL ASAVSRLSTA DSTPSSISFG HRRSRGLAFV PRSIRQNKQV  300
SQTEPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.15e-82C2H2 family protein