PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G14140.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 264aa    MW: 30103 Da    PI: 9.0054
Description zinc ion binding;nucleic acid binding;zinc ion binding
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G14140.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-0597119223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +C+ C+++++++ +L  Hi+  H
  AT5G14140.1  97 SCSVCSRVYPTSRLLSIHISEaH 119
                  6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.266994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM00355596119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.079134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK  60
FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV CSRVYPTSRL LSIHISEAHD  120
SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK  180
LQRQHVSKLK HEEDKEAASS DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG  240
LTFVPRSVHR EKRTESSSAP GPTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179KKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.319690.0flower| leaf| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341876720.0
Expression AtlasAT5G14140-
AtGenExpressAT5G14140-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G14140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G14140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196918.20.0nucleic acid binding / zinc ion binding protein
TrEMBLA0A178UDE40.0A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF40.0Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGAT5G14140.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Representative plantOGRP75381313
Publications ? help Back to Top
  1. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]