PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G04510.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 455aa MW: 47196.5 Da PI: 8.5757

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G04510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	156.9	1.1e-48	123	279	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s+as+sss++aa+++ OGLUM11G04510.1 123 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAPFH 216 789****************************************************************9999***************** PP TCP 95 akskksqksaasalnlakesr....................akarararertrekmriknkln 137 + ++++q++ a++l ++++++ a + +r+r+r++++ +++++++ OGLUM11G04510.1 217 HLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 279 **************9999******************************999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MIKDLRTLES WTKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS 60 RSTSDHHAAA QGGANTMPAP ASFMGSLAIV PAAAAPGGGG GQVQAAAAPV ASSEKKAVVA 120 AGAGAKRPTK DRHTKVEGRG RRIRMPALCA ARVFQLTREL GHKTDGETIE WLLQQAEPAI 180 VAATGTGTIP ANFSSLAVSL RSAASHSSSP RAAPFHHLQQ QQQHDVAAML GFHHHHHQLL 240 PPPPPHQHPE PTPQDPGAGE FMRKRYREAD DLFKDTSRQD PVDGATGEAE QKARAAAATA 300 APPPTAPSAM WAVGPNTTGA TAAFWMQPAW AFPPGAGAAG NTVQAPLQFM SRSSFPTAMN 360 VTMADNNNSS NNNLGMLAAL NAGGGGRSGE HQHQHEGQSP AEMDHQRRAN GGGGEAGGAA 420 SSQFRMIINQ FAIVRGFTSP VIYLNHENPI KVAEN

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MIKDLRTLES WTKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS  60
RSTSDHHAAA QGGANTMPAP ASFMGSLAIV PAAAAPGGGG GQVQAAAAPV ASSEKKAVVA  120
AGAGAKRPTK DRHTKVEGRG RRIRMPALCA ARVFQLTREL GHKTDGETIE WLLQQAEPAI  180
VAATGTGTIP ANFSSLAVSL RSAASHSSSP RAAPFHHLQQ QQQHDVAAML GFHHHHHQLL  240
PPPPPHQHPE PTPQDPGAGE FMRKRYREAD DLFKDTSRQD PVDGATGEAE QKARAAAATA  300
APPPTAPSAM WAVGPNTTGA TAAFWMQPAW AFPPGAGAAG NTVQAPLQFM SRSSFPTAMN  360
VTMADNNNSS NNNLGMLAAL NAGGGGRSGE HQHQHEGQSP AEMDHQRRAN GGGGEAGGAA  420
SSQFRMIINQ FAIVRGFTSP VIYLNHENPI KVAEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	5e-37	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G04510.1