PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G72010.1

Common Name

F28P5.10, TCP22

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 375aa MW: 39598.9 Da PI: 8.9846

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G72010.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.3e-39	59	157	4	102
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskks 100 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s s++ s+ ++a+++ +s s AT1G72010.1 59 VKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStL-NASLRSGGGSTLFSQASKSSSSPLS 155 589****************************************************************99843.3333333323333333333233333 PP TCP 101 qk 102 + AT1G72010.1 156 FH 157 33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.9E-36	63	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.109	63	117	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK 60 KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIIASTGT 120 GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK 180 LLNSAANAAV FGFHHQMYPP IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ 240 EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG 300 NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE 360 PNQSQASENG GDDKK

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK  60
KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIIASTGT  120
GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK  180
LLNSAANAAV FGFHHQMYPP IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ  240
EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG  300
NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE  360
PNQSQASENG GDDKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.23095	0.0	flower\| leaf\| root\| vegetative tissue

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	42563156	0.0
Expression Atlas	AT1G72010	-
AtGenExpress	AT1G72010	-

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00228	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G72010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G72010

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069273	0.0	AC069273.4 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence.
GenBank	AY080776	0.0	AY080776.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBank	AY150488	0.0	AY150488.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177346.1	0.0	TCP family transcription factor
Swissprot	Q9C7G4	0.0	TCP22_ARATH; Transcription factor TCP22
TrEMBL	A0A178W3Z1	0.0	A0A178W3Z1_ARATH; Uncharacterized protein
STRING	AT1G72010.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41
Representative plant	OGRP4591	10	23

Link Out ? help Back to Top
Phytozome	AT1G72010.1
Entrez Gene	843532
iHOP	AT1G72010
wikigenes	AT1G72010

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Dal Bosco C, et al. Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Wagner R,Pfannschmidt T Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants. Gene, 2006. 381: p. 62-70 [PMID:16934950] Aguilar-Martínez JA,Poza-Carrión C,Cubas P Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds. Plant Cell, 2007. 19(2): p. 458-72 [PMID:17307924] Heyl A, et al. The transcriptional repressor ARR1-SRDX suppresses pleiotropic cytokinin activities in Arabidopsis. Plant Physiol., 2008. 147(3): p. 1380-95 [PMID:18502977] Efroni I, et al. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Dev. Cell, 2013. 24(4): p. 438-45 [PMID:23449474] Kim SH, et al. The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Plant J., 2014. 78(6): p. 978-89 [PMID:24689742] Davi Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height. Curr. Biol., 2014. 24(16): p. 1923-8 [PMID:25127215] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]