PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G04050.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 320aa    MW: 32631 Da    PI: 5.417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G04050.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20130179255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a+++++g
  OGLUM11G04050.1 130 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDDAALRFRG 179
                      8********.**********64....55************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MCGGGKVASP PGPRLPRLAG AGGEEEEEEA AAGMLSRHGQ AREMSVMVSA LARVVAGGGG  60
GEAEEWWPPA YGAAPLPPST SPASHEHAAA MAAGQYAPAT SSAMASPREQ ASSPSSGDAA  120
GGGGGGGRKR YRGVRQRPWG KWAAEIRDPV KAARVWLGTF DTAEAAARAY DDAALRFRGC  180
RAKLNFPEDA ALLPPPPPPP APAPTPTPPQ SQGMVGVGEE YSEYARFLQG AGEPPHFLEQ  240
IMEDSPRPST AAGASSSSSG QSSFPLFYSF AGHELGGNEA NLARPPESGG AGGDGGRGSS  300
PPATWPGYGW GAPPPWDPSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133GRKRYRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-23ERF family protein