PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G03790.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 445aa MW: 50389.4 Da PI: 6.4099

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G03790.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.2	7.9e-27	114	210	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d OGLUM11G03790.3 114 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 207 7*******************8744455667777******************************************55********* PP trihelix 84 qle 86 +++ OGLUM11G03790.3 208 HMN 210 996 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI 60 SDGVQLGQHG KIAHHHHHHI HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV 120 KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL 180 NKRYKRLTDI LGRGTACNVV ENHSLLDHMN ISEKMKEDAR KILNSKHLFY EEMCSYHNNN 240 RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEENE EEHRAVDTNI 300 RGPSMHKRMW HVVDHGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGSDL ALVQKDLALK 360 AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KRLQINSIQD 420 RGELFLTMNA EVKSKCGGLA SQMAM

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEGSNPPGNM TQGPSYGSLD LHGISKQMHP PNSGNQGFNQ PQIPGNFTIP MDRVTEPDNI  60
SDGVQLGQHG KIAHHHHHHI HHSKNHGSDE EEHDMNEDAA DGKDKKGSPW HRMKWTDSMV  120
KLLITAVSYT GEDPGADLGG GRRNYSMMQK KGKWKAISKV MGERGCHVSP QQCEDKFNDL  180
NKRYKRLTDI LGRGTACNVV ENHSLLDHMN ISEKMKEDAR KILNSKHLFY EEMCSYHNNN  240
RISLPEDPAL QQSLQLALRC KEDNDFMRHA SGDAELDDDQ SEDSDYEENE EEHRAVDTNI  300
RGPSMHKRMW HVVDHGDVGF VTSCSNDGSG RSDPYDVLDI NKPFPDGSDL ALVQKDLALK  360
AAEIQKHRLQ IETKAVQLAK QRLKWEMFRK NKDLELEKLA LENEQMMLQN KRLQINSIQD  420
RGELFLTMNA EVKSKCGGLA SQMAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-87	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G03790.3