PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G01310.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 388aa MW: 42937.9 Da PI: 6.6968

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G01310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.2e-52	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL +++++ k+++ +i+ev+iyk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls OGLUM11G01310.1 11 LPPGFRFHPTDEELIVHYLMNQAASVKCPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSILS 103 79**************************.88***********8777899**********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl OGLUM11G01310.1 104 TpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 138 988899*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA 60 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK 120 GKPPKGVKTD WIMHEYRLTG TSANSTKQRR ASSMTMRLDD WVLCRIHKKS NDFNSSDQHD 180 QEPEGSTVEQ LEDIHDNNSS EAPAPADMNN QQSDFQPMTA MMSMSKSCSL TDLLNTIDCA 240 ALSQFLLDGS SDAIAEPPAP PSPLIYTTPH PNYQTLNYNI NSNSSMPHAF ESRLDHHDGY 300 VNNYNVNGLR RKRMMACSAT SFDDGSSSND FVHAVVKKPQ LLPSDSRGSG FGGGYCNQQL 360 SETATGFQFQ NGNLLSHPFP LNNHLQMQ

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA  60
LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK  120
GKPPKGVKTD WIMHEYRLTG TSANSTKQRR ASSMTMRLDD WVLCRIHKKS NDFNSSDQHD  180
QEPEGSTVEQ LEDIHDNNSS EAPAPADMNN QQSDFQPMTA MMSMSKSCSL TDLLNTIDCA  240
ALSQFLLDGS SDAIAEPPAP PSPLIYTTPH PNYQTLNYNI NSNSSMPHAF ESRLDHHDGY  300
VNNYNVNGLR RKRMMACSAT SFDDGSSSND FVHAVVKKPQ LLPSDSRGSG FGGGYCNQQL  360
SETATGFQFQ NGNLLSHPFP LNNHLQMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	7e-83	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G01310.1