PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G18630.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 309aa    MW: 34147.4 Da    PI: 4.7752
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G18630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-1386130347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  OGLUM10G18630.1  86 PWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 130
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGVFVRGWRL VLRAFAGGED GGAALGERGD ASSGISDLGL WKMDLSDDVY QLLSEVKHMN  60
LMMETVATAH SEYANMEWLP LPAGVPWTEE EHRRFLLGLQ KLGKGDWRGI SRNFVVSRTP  120
TQVASHAQKY FIRQSNMTRR KRRSSLFDMV PDESMDLPPL PGGQEPETQV LNQPALPPPR  180
EEEEVDSMES DTSAVAESSS ASAIMPDNLQ STYPVIVPAY FSPFLQFSVP FWQNQKDEDG  240
PVQETHEIVK PVPVHSKSPI NVDELVGMSK LSIGESNQET VSTSLSLNLV GGQNRQSAFH  300
ANPPTRAQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-69MYB_related family protein