PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G12070.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 537aa MW: 58014.9 Da PI: 8.1042

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G12070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	63.3	2.7e-20	70	103	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgtt+Tp+WR+gp+g++tLCnaCG++yr+ + OGLUM10G12070.1 70 CRHCGTTETPQWRHGPEGHRTLCNACGMRYRSGK 103 *******************************976 PP
2	GATA	49.8	4.7e-16	244	277	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++CgttkTp WR gpd ++LCnaCG +yr+ OGLUM10G12070.1 244 CAHCGTTKTPAWRLGPDSRRKLCNACGNKYRSGQ 277 *******************************976 PP
3	GATA	47.6	2.3e-15	464	498	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++CgttkTp W +gpd +LCnaCG yrk +l OGLUM10G12070.1 464 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 498 ********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MVVVDGLHDG GGGDLQALLD DAVLDYVAAR GGGGGDVGEV KVEVERPSDE DAFPAVEKMA 60 TAAAAKGLQC RHCGTTETPQ WRHGPEGHRT LCNACGMRYR SGKLVPEYRP LKNPTFSPEL 120 HSNRHHRVLQ LRRRPRPGPR SAVPAPAAVA RCGGEAKEEE EELAWVSNKD AFATVETTMA 180 PSPRVVETPP EHDHRPPNIP ITSPEPHSDR PRRVVQLPRR LQEPSASTNL AHAVAATARA 240 GRECAHCGTT KTPAWRLGPD SRRKLCNACG NKYRSGQLNS TTFSQNSQEQ KKKSKSSTCS 300 RERKRSAAAT AAVVVDGLHD DAAAIADEHL DGGDLQALLD DVGLDDVAAR GGGDAGEAKE 360 EEEELEWLSN KEAFPTVETM SPAPPESRTK APVPPAGWQC RHCGSTATPL WRDGPGEAEH 420 VRKEETPPNI TPATKHRRIV DLLRCSTAPN TAATATATAV ERRCTHCGTT KTPAWLSGPD 480 SRGKLCNACG KQYRKGRLVP EYRPLNCPTF SPELHSNAHA HRRRRESPVA IAIAGEK

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MVVVDGLHDG GGGDLQALLD DAVLDYVAAR GGGGGDVGEV KVEVERPSDE DAFPAVEKMA  60
TAAAAKGLQC RHCGTTETPQ WRHGPEGHRT LCNACGMRYR SGKLVPEYRP LKNPTFSPEL  120
HSNRHHRVLQ LRRRPRPGPR SAVPAPAAVA RCGGEAKEEE EELAWVSNKD AFATVETTMA  180
PSPRVVETPP EHDHRPPNIP ITSPEPHSDR PRRVVQLPRR LQEPSASTNL AHAVAATARA  240
GRECAHCGTT KTPAWRLGPD SRRKLCNACG NKYRSGQLNS TTFSQNSQEQ KKKSKSSTCS  300
RERKRSAAAT AAVVVDGLHD DAAAIADEHL DGGDLQALLD DVGLDDVAAR GGGDAGEAKE  360
EEEELEWLSN KEAFPTVETM SPAPPESRTK APVPPAGWQC RHCGSTATPL WRDGPGEAEH  420
VRKEETPPNI TPATKHRRIV DLLRCSTAPN TAATATATAV ERRCTHCGTT KTPAWLSGPD  480
SRGKLCNACG KQYRKGRLVP EYRPLNCPTF SPELHSNAHA HRRRRESPVA IAIAGEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	9e-25	GATA family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G12070.1