PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G08810.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 222aa    MW: 24485.2 Da    PI: 9.9858
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G08810.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA74.91.6e-23123179158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      dep+YVNaKQy++I++RRq+R+ + +e+k+ ++ rk++l e+R+k+A+ R+Rg+gGrF
  OGLUM10G08810.1 123 DEPIYVNAKQYHAIIRRRQRRKIVGSEDKV-AAIRKRILVEARQKQAKLRRRGKGGRF 179
                      79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MGFGESTQGN QRKLDGPGKV STELSLVNLE AKNLHPKPEC NQPLVSSPFI GKEKWKVAAP  60
KEELETLIFC PVSTADKELE VHMANIAKLA YSLVLLLKGI EHIPTKGMKC TPLLPLPTEH  120
ADDEPIYVNA KQYHAIIRRR QRRKIVGSED KVAAIRKRIL VEARQKQAKL RRRGKGGRFI  180
SIEHPLELSM DDQISKNGGS ASPSSSTVSE NSSNVNGFTG DL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.18e-16NF-YA family protein