PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G00640.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 343aa    MW: 37492.7 Da    PI: 10.6195
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G00640.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind303.86.2e-93543381296
        GAGA_bind   1 mdddgsre....rnkg.yyepaaslkenlglqlmssia.erdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                      m+dd+s++    r +g +yep    ++nlglqlmss++ +rd+k   + + + ++++  ++            +++++ +++rd    a+    
  OGLUM10G00640.1  54 MNDDASMSsmglRGWGaFYEPP---ARNLGLQLMSSVPaDRDTKHLLSATPFLHHHQHQQH----------VPHHHHQPHHPRDCGTNANAN-- 132
                      7777777667789***9***99...88**********989999976655544444433222..........223334567788876655544.. PP

        GAGA_bind  89 nslasalpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
                          + ++vg++++  t+++ +lq++ e  pql++++ +  ++ee+++ + +ee++    + + +kkrq++k+pk+++ kk+kk +++++++ +
  OGLUM10G00640.1 133 ---GNGNGVGYGMMLATHTLRMLQHQPEpqPQLQHPPSPpHPKEECISPPLMEENV--PVKPPPPKKRQQGKQPKVPRPKKPKK-PAAPREDGA 220
                      ...2457999*********9999997666699*99999978999999888877755..5678899999****************.9999***** PP

        GAGA_bind 180 kesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                      ++sa+ +r++ ++k+i++v+ng++lD s++P+ +CsCtGa++qCY+WG+GGWqSaCCttt+S+yPLP+s krrgaRiagrKmS+gafkk+LekL
  OGLUM10G00640.1 221 PPSAPaPRRRGPRKNIGMVINGIDLDLSRIPTRICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPLPMSMKRRGARIAGRKMSHGAFKKVLEKL 314
                      ***999**************************************************************************************** PP

        GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnk 296
                      a+eGy+l+np+DLk++WAkHGtnk
  OGLUM10G00640.1 315 ASEGYNLNNPIDLKTFWAKHGTNK 338
                      ***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MAVVGMHGGS WGGGDGGGGV EVEGEGRKWR WKGRHQHGSA YIGGPDRRFG DGKMNDDASM  60
SSMGLRGWGA FYEPPARNLG LQLMSSVPAD RDTKHLLSAT PFLHHHQHQQ HVPHHHHQPH  120
HPRDCGTNAN ANGNGNGVGY GMMLATHTLR MLQHQPEPQP QLQHPPSPPH PKEECISPPL  180
MEENVPVKPP PPKKRQQGKQ PKVPRPKKPK KPAAPREDGA PPSAPAPRRR GPRKNIGMVI  240
NGIDLDLSRI PTRICSCTGA PQQCYRWGAG GWQSACCTTT VSTYPLPMSM KRRGARIAGR  300
KMSHGAFKKV LEKLASEGYN LNNPIDLKTF WAKHGTNKES GAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.17e-55BBR-BPC family protein