PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G00630.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 331aa    MW: 36670.8 Da    PI: 10.3883
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G00630.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind395.38.7e-12113311301
        GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd....................... 57 
                      mddd+s++ r +g ++e+    ++nlglqlmss++ +rd+k+           +++++  +++++++++rd                       
  OGLUM10G00630.1   1 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgspflhhqHQQHV-PHHHHQPHHPRDcgangnanggamppspateapps 89 
                      9*******66.777***99...88**********99**************99656666.9********************************** PP

        GAGA_bind  58 ..maflqrdkalae..rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeake 146
                        m+f+++d++++   +++++++r++k+l++l+v +       vg+++++gt++++++qq++epq ++++ + +++ee+++++ iee++++++e
  OGLUM10G00630.1  90 mpMNFARSDMWMHPqqQQQHHHPREHKALHNLTVGH-------VGYGMIPGTHTLQMMQQQTEPQPQPPPPPqQPKEECISSPLIEENVPVIDE 176
                      ************9754778999***********998.......59**********************99999899******************* PP

        GAGA_bind 147 kkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttti 239
                       + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+P+CsCtGa++qCY+WG+GGWqSaCCttti
  OGLUM10G00630.1 177 PPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTI 269
                      ***********************.88999*******999******************************************************* PP

        GAGA_bind 240 SvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      S+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  OGLUM10G00630.1 270 STYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 331
                      *************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGSPFLHHQH QQHVPHHHHQ  60
PHHPRDCGAN GNANGGAMPP SPATEAPPSM PMNFARSDMW MHPQQQQQHH HPREHKALHN  120
LTVGHVGYGM IPGTHTLQMM QQQTEPQPQP PPPPQQPKEE CISSPLIEEN VPVIDEPPPP  180
KKRQQGRQPK VPRAKKPKKS AAPREDGAPP NAPAPRRRGP RKNIGMVING IDLDLSRIPT  240
PICSCTGAPQ QCYRWGAGGW QSACCTTTIS TYPLPMSTKR RGARIAGRKM SHGAFKKVLE  300
KLAGEGYNLN NPIDLKTFWA KHGTNKFVTI R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-60BBR-BPC family protein