PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G00620.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 341aa    MW: 37754 Da    PI: 10.2984
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G00620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind406.63e-12413411301
        GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd....................... 57 
                      mddd+s++ r +g ++e+    ++nlglqlmss++ +rd+k+           +++++  +++++++++rd                       
  OGLUM10G00620.1   1 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgspflhhqHQQHV-PHHHHQPHHPRDcgangnanggamppspateapps 89 
                      9*******66.777***99...88**********99**************99656666.9********************************** PP

        GAGA_bind  58 ..maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaee 143
                        m+f+++d++++   +++++++r++k+l++l+v ++++   +++pvg+++++gt++++++qq++epq ++++ + +++ee+++++ iee++++
  OGLUM10G00620.1  90 mpMNFVRSDMWMHPqqQQQHHHPREHKALHNLTVGHGSShiaHHDPVGYGMIPGTHTLQMMQQQTEPQPQPPPLPqQPKEECISSPLIEENVPV 183
                      ************9754778999**************9988999******************************99899**************** PP

        GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCt 236
                      ++e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+P+CsCtGa++qCY+WG+GGWqSaCCt
  OGLUM10G00620.1 184 IDEPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCT 276
                      **************************.88999*******999**************************************************** PP

        GAGA_bind 237 ttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      ttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  OGLUM10G00620.1 277 TTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
                      ****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGSPFLHHQH QQHVPHHHHQ  60
PHHPRDCGAN GNANGGAMPP SPATEAPPSM PMNFVRSDMW MHPQQQQQHH HPREHKALHN  120
LTVGHGSSHI AHHDPVGYGM IPGTHTLQMM QQQTEPQPQP PPLPQQPKEE CISSPLIEEN  180
VPVIDEPPPP KKRQQGRQPK VPRAKKPKKS AAPREDGAPP NAPAPRRRGP RKNIGMVING  240
IDLDLSRIPT PICSCTGAPQ QCYRWGAGGW QSACCTTTIS TYPLPMSTKR RGARIAGRKM  300
SHGAFKKVLE KLAGEGYNLN NPIDLKTFWA KHGTNKFVTI R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.12e-60BBR-BPC family protein