PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G13890.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 363aa MW: 38232.2 Da PI: 6.508

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G13890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.4e-11	137	193	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr+l+P+++ + + a+i+ A++++k+L OGLUM09G13890.1 137 QRMTHIAVERNRRKQMNEYLAVLRSLMPPSYaqrYCLCAQGDQASIVGGAINFVKEL 193 79***************************7545533445557788888888887777 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MALEAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF EGVMDLDGSN WDAAACSSML 60 LHGFQELEIP AAAAAAAAMA PPPPPVEPAN CAENAGGVGG HQEDQAAVAA AATAVQAGRR 120 KRRRARAAKN KEEVESQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYAQR YCLCAQGDQA 180 SIVGGAINFV KELEQLLQSL EARKSSRQCA AHDAAAAAAP FASFFTFPQY SMSAAAAAAA 240 PVAPVVNEVH GRDDGGAGTA EAEASGSKPS AVADVEVTMV ESHANLRVLS RRRPRQLLRL 300 VVALQGHRLT VLHLNMTSAG HMVLYSFSLK VEDDCQLTSV DEIATAAHQI IEKIQEEQGC 360 SLD

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MALEAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF EGVMDLDGSN WDAAACSSML  60
LHGFQELEIP AAAAAAAAMA PPPPPVEPAN CAENAGGVGG HQEDQAAVAA AATAVQAGRR  120
KRRRARAAKN KEEVESQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYAQR YCLCAQGDQA  180
SIVGGAINFV KELEQLLQSL EARKSSRQCA AHDAAAAAAP FASFFTFPQY SMSAAAAAAA  240
PVAPVVNEVH GRDDGGAGTA EAEASGSKPS AVADVEVTMV ESHANLRVLS RRRPRQLLRL  300
VVALQGHRLT VLHLNMTSAG HMVLYSFSLK VEDDCQLTSV DEIATAAHQI IEKIQEEQGC  360
SLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	124	RKRRR
2	138	149	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-50	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G13890.1