PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G13230.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 274aa    MW: 29203.8 Da    PI: 6.2807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G13230.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20129179256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr ++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+++++g+
  OGLUM09G13230.1 129 VYRGVRHRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAALEFRGA 179
                      69****888.**********82....48*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MTKKVIPAMA AARQDSCKTK LDERGGSHQA PSSARWISSE QEHSIIVAAL RYVVSGCTTP  60
PPEIVTVACG EACALCGIDG CLGCDFFGAE AAGNEEAVMA TDYAAAAAAA AVAGGSGGKR  120
VRRRRKKNVY RGVRHRPWGK WAAEIRDPRR AVRKWLGTFD TAEEAARAYD RAALEFRGAR  180
AKLNFPCSEP LPMPSQRNGN GGEAVTAATT TAEQMTPTLS PCSADAEETT TPVDWQMGAD  240
EAGSNQLWDG LQDLMKLDEA DTWFPPFSGA ASSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127KRVRRRRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-21ERF family protein