PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G12850.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 282aa    MW: 31513.6 Da    PI: 10.1369
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G12850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.77.1e-3333130298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++r+ws+ De+++L+Gli++++k+g+   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+gke +f ++hd++i++l+k
  OGLUM09G12850.1  33 RPSRVWSQADELIILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQLAK 125
                      679************************888899***************************************999999.9************** PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  OGLUM09G12850.1 126 KVWGT 130
                      ***95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDPPPRRSAG GSEPRAKRPR SAAVASSAEH SKRPSRVWSQ ADELIILRGL ITYRTKRGVL  60
PGSTQDIGKL HSYIRGQLSA KVSTTQLSDK VRRLKQKYQM LATRAKTGKE VFPTPHDHNI  120
YQLAKKVWGT MSTAGEGGGS GYDNADAGES EEEQYGRESD DDMESGRDNR HRKNQRSVPV  180
TMANGNGTGI GAVNAIVRGR SEFEKGKDVY PYLWETVEEL SSQHPTGAVF KKAFELLEGS  240
KAQVMEEKLR KFRLTEMRQQ LRRMDLMKDT LSMVLDALEM AD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.12e-15GeBP family protein