PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G11510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 352aa MW: 39230.8 Da PI: 5.3298 | ||||||||
Description | DNA-binding storekeeper protein-related transcriptional regulator | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 121 | 6.2e-38 | 137 | 229 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqrlw+e+Deiv+LqGlid k++tg+ ++++++ye vkksisf+vsk+ql+eK+r LKkK++++ kak+g ep+f k+hd+k+felsk +Wg AT1G11510.1 137 YFQRLWTEDDEIVVLQGLIDDKKDTGV---SNTNKVYELVKKSISFDVSKNQLMEKLRALKKKYENNLGKAKDGVEPTFVKPHDRKAFELSKLVWG 229 79************************5...59***************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.0E-31 | 138 | 229 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MSRRFNPLED PPSASSSDEE GKEIARNSSS DDEDDVSSEN PSPLKTTLDA VSDSESGSDE 60 ETDSDSELEK KKDQVVTNPV DVKRAKKVKT SEKSGAKRSL EVDEAAVSMD VKRAKKVSGE 120 EEKKKSGGGG EETKKTYFQR LWTEDDEIVV LQGLIDDKKD TGVSNTNKVY ELVKKSISFD 180 VSKNQLMEKL RALKKKYENN LGKAKDGVEP TFVKPHDRKA FELSKLVWGG IRMALASGMK 240 SNEKSKKSSK FESVKHELDS SLPNSKNNCE DEVMDEGEVS FTKSSLVRSI VGLGMDELTA 300 QQGLSKLASK DMKRFYEQWK AMQAREFEFF LQKHGFLFEV LSKISEAFGS NA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18391286 | 0.0 | ||||
Expression Atlas | AT1G11510 | - | ||||
AtGenExpress | AT1G11510 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G11510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G11510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011661 | 0.0 | AC011661.5 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_172618.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator | ||||
Swissprot | C0SUU6 | 0.0 | STKLA_ARATH; Probable transcription factor At1g11510 | ||||
TrEMBL | A0A178WF60 | 0.0 | A0A178WF60_ARATH; Uncharacterized protein | ||||
STRING | AT1G11510.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 | Representative plant | OGRP4222 | 5 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT1G11510.1 |
Entrez Gene | 837694 |
iHOP | AT1G11510 |
wikigenes | AT1G11510 |
Publications ? help Back to Top | |||
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