PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G10770.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 404aa MW: 43368 Da PI: 8.4379

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G10770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.3	4.2e-30	242	301	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y+rCt+a +Cpvkkkv+rsaed ++++ tYegeHnh+ OGLUM09G10770.1 242 VKDGYQWRKYGQKVTRDNPSPRAYFRCTFApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 301 58*************************99**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MAGVDSQLAR APFSPTDPCK LKTTRSRSRR LYVAPPIPHE PFKCLYLALL ACFCFDYSSS 60 RAQQQRDASC SWSSSSSMDA AWRGGVGCSP VCLDLCVGLS PVREPSAARH ELLDRPAGCR 120 GGGDSKPMTN DEAKILEAKV TQMSEENRRL TEVIARLYGG QIARLGLDGS ASPPRPVSPL 180 SGKKRSRESM ETANSCDANS NRHQGGDADH AESFAADDGT CRRIKVSRVC RRIDPSDTSL 240 VVKDGYQWRK YGQKVTRDNP SPRAYFRCTF APSCPVKKKV QRSAEDSSLL VATYEGEHNH 300 PHPSPRAGEL PAAAGGAGGS LPCSISINSS GPTITLDLTK NGGAVQVVEA AHPPPPPDLK 360 EVCREVASPE FRTALVEQMA SALTSDPKFT GALAAAILQK LPEF

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MAGVDSQLAR APFSPTDPCK LKTTRSRSRR LYVAPPIPHE PFKCLYLALL ACFCFDYSSS  60
RAQQQRDASC SWSSSSSMDA AWRGGVGCSP VCLDLCVGLS PVREPSAARH ELLDRPAGCR  120
GGGDSKPMTN DEAKILEAKV TQMSEENRRL TEVIARLYGG QIARLGLDGS ASPPRPVSPL  180
SGKKRSRESM ETANSCDANS NRHQGGDADH AESFAADDGT CRRIKVSRVC RRIDPSDTSL  240
VVKDGYQWRK YGQKVTRDNP SPRAYFRCTF APSCPVKKKV QRSAEDSSLL VATYEGEHNH  300
PHPSPRAGEL PAAAGGAGGS LPCSISINSS GPTITLDLTK NGGAVQVVEA AHPPPPPDLK  360
EVCREVASPE FRTALVEQMA SALTSDPKFT GALAAAILQK LPEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	4e-53	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G10770.1