PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G25260.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 438aa MW: 47741.1 Da PI: 8.694

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G25260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.2	3.8e-07	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H OGLUM08G25260.1 257 HYCQVCGKGFKRDANLRMHMRAH 279 68*******************99 PP
2	zf-C2H2	12	0.00063	349	372	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ Cg k+Fs s+L++H + + OGLUM08G25260.1 349 YVCNRCGrKHFSVLSDLRTHEKHC 372 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MASAERRIRM WWRTAGRPKH LWGRRSMLYM GHSRIYMDRY YDPIELHGQP PPLLMIPGGG 60 GGGGGGISPY LVQSQHGHGG GVDGMEMEEG GGFMGEQPQC HPLLYNLSVL KDRVQQLHPL 120 VGLAVAHNAH AHGPLDVSAA DAIIQEIVAA ASSMMYAFQL LCDLGTAPTT APSQETAAAS 180 AVVVKNNDHA ADAGQMEDDH LMQQQWQQNG SRQHDYSSHA HAPPVFHSET AAPAGATSAT 240 DTIIELDAAE LLAKYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKSKAALS NPTKLLAKGG 300 DETMAAAARK YSCPQEGCRW NRRHAKFQPL KSVICAKNHY KRSHCPKMYV CNRCGRKHFS 360 VLSDLRTHEK HCGDHRWLCS CGTSFSRKDK LIGHVSLFAG HQPVMPLDAP RAGKRQRSSS 420 ASVAGNIDDT TGIGMGAA

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MASAERRIRM WWRTAGRPKH LWGRRSMLYM GHSRIYMDRY YDPIELHGQP PPLLMIPGGG  60
GGGGGGISPY LVQSQHGHGG GVDGMEMEEG GGFMGEQPQC HPLLYNLSVL KDRVQQLHPL  120
VGLAVAHNAH AHGPLDVSAA DAIIQEIVAA ASSMMYAFQL LCDLGTAPTT APSQETAAAS  180
AVVVKNNDHA ADAGQMEDDH LMQQQWQQNG SRQHDYSSHA HAPPVFHSET AAPAGATSAT  240
DTIIELDAAE LLAKYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKSKAALS NPTKLLAKGG  300
DETMAAAARK YSCPQEGCRW NRRHAKFQPL KSVICAKNHY KRSHCPKMYV CNRCGRKHFS  360
VLSDLRTHEK HCGDHRWLCS CGTSFSRKDK LIGHVSLFAG HQPVMPLDAP RAGKRQRSSS  420
ASVAGNIDDT TGIGMGAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-102	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G25260.1