PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G23730.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 373aa MW: 38499.7 Da PI: 5.2123

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G23730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.5	4.1e-37	73	172	6	94
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssasnsssg... 88 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ ++sssss g OGLUM08G23730.1 73 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvlriPTQSSSSS------Gpas 160 6999********************************************************666663333222222211112222......1222 PP TCP 89 .......kaaksa 94 + ++++ OGLUM08G23730.1 161 savvdgeE-SSAK 172 22233221.1111 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MEAQAQDKAE EGEEEGTRQQ HAQAGPVGAA GGGGGGGAAA VAMSAIPMNS WLVPKPEPVE 60 FFGGMAMVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIRWLLQ 120 QSEPAIIAAT GTGTVPAIAT TVDGVLRIPT QSSSSSGPAS SAVVDGEESS AKRRRKLQPT 180 RAVAGASPLA TAAPAAYYPV IADPLLQGSG GAAISVPSGL APITATGAPQ GLVPVFAVPA 240 TGSPAVAGGN RMIPQATAVW MVPQPAGAAG AGNQPTQFWA IQSAPQLVNF AGAQFPTAIN 300 VADFQQQQQQ QPVSTTIVQN SNSGQHMHFS GADSHEQQRR GRKEGNSGGV VDHPEEDEDD 360 DDDEPVSDSS PEE

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MEAQAQDKAE EGEEEGTRQQ HAQAGPVGAA GGGGGGGAAA VAMSAIPMNS WLVPKPEPVE  60
FFGGMAMVRK PPPRNRDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIRWLLQ  120
QSEPAIIAAT GTGTVPAIAT TVDGVLRIPT QSSSSSGPAS SAVVDGEESS AKRRRKLQPT  180
RAVAGASPLA TAAPAAYYPV IADPLLQGSG GAAISVPSGL APITATGAPQ GLVPVFAVPA  240
TGSPAVAGGN RMIPQATAVW MVPQPAGAAG AGNQPTQFWA IQSAPQLVNF AGAQFPTAIN  300
VADFQQQQQQ QPVSTTIVQN SNSGQHMHFS GADSHEQQRR GRKEGNSGGV VDHPEEDEDD  360
DDDEPVSDSS PEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-45	TCP family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G23730.1