PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G23160.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 31651.4 Da    PI: 6.4221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G23160.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09133180455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  OGLUM08G23160.1 133 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 180
                      8*************************9....555*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MADFSPHHSL LLKATAAGAA IATTNDPNIS SFFLYNHSHG SQAPQPANAA AAAIVEDASL  60
ESSVSAVLDT SPSVDRKRKA AEDSAHSKDS CKDGKSRRGK KASKEVEEKS TTEDEPPKGY  120
IHVRARRGQA TDSHSLAERV RRERISERMR MLQALVPGCD KVTGKALILD EIINYVQSLQ  180
NQVEFLSMRI ASMSPVLYGF GMDSDGLHDQ KIGGMFQEAL AMPTPVLNQS SPAPSQAIMD  240
TTSTTSYSLQ SQHGAISFSQ DNDSYLMQAV GEPRQQEMLN QLVFNNMCSF Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-47bHLH family protein