PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G20430.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 580aa MW: 62893.9 Da PI: 8.2474

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G20430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.5	2.4e-32	182	238	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkkkve s+ d++++ei+Y+g+Hnh+ OGLUM08G20430.1 182 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTDCAVKKKVESSQ-DGQITEIVYKGSHNHP 238 8***********************************999.*************7 PP
2	WRKY	105.7	2.4e-33	393	451	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe OGLUM08G20430.1 393 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 451 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MAARTGFGVL KIDTSRVGYS TPIRSPVTIP PGVSPRELLE SPVFLPNAIA QPSPTTGKLP 60 FLMHSNVKPS IPKKTEDETR HDRVFFFQPI LGSKPPTCPV AEKGFSVNHQ NQPSVTDNHQ 120 ELSLQSSSTA AKDFTSATIV KPKTSDSMLD NDDHPSPAND QEENATNKNE EYSSDLIITP 180 AEDGYNWRKY GQKQVKNSEH PRSYYKCTFT DCAVKKKVES SQDGQITEIV YKGSHNHPLP 240 PSNRRPNVPF SHFNDLRDDH SEKFGSKSGQ ATATSWENAA NGHLQDVGSE VLTKLSASLT 300 TTEHAEKSVM DKQEAVDISS TLSNEEDDRV THRAPLSLGF DANDDDVEHK RRKMDVYAAT 360 STSTNAIDIG AVASRAVREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT 420 HPGCSVRKHV ERSSHDLKSV ITTYEGKHNH EVPAARNSGH PSSGSAAAPQ ATNGLLHRRP 480 EPAQGGGGGS LAQFGYGSAG HRPAEQFGAA AAGFSFGMLP RSIATPAPSP AIAVPAMQGY 540 PGLVLPRGEM KVNLLPQSGN AGAAASQQLM GRLPKQHPQM

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MAARTGFGVL KIDTSRVGYS TPIRSPVTIP PGVSPRELLE SPVFLPNAIA QPSPTTGKLP  60
FLMHSNVKPS IPKKTEDETR HDRVFFFQPI LGSKPPTCPV AEKGFSVNHQ NQPSVTDNHQ  120
ELSLQSSSTA AKDFTSATIV KPKTSDSMLD NDDHPSPAND QEENATNKNE EYSSDLIITP  180
AEDGYNWRKY GQKQVKNSEH PRSYYKCTFT DCAVKKKVES SQDGQITEIV YKGSHNHPLP  240
PSNRRPNVPF SHFNDLRDDH SEKFGSKSGQ ATATSWENAA NGHLQDVGSE VLTKLSASLT  300
TTEHAEKSVM DKQEAVDISS TLSNEEDDRV THRAPLSLGF DANDDDVEHK RRKMDVYAAT  360
STSTNAIDIG AVASRAVREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT  420
HPGCSVRKHV ERSSHDLKSV ITTYEGKHNH EVPAARNSGH PSSGSAAAPQ ATNGLLHRRP  480
EPAQGGGGGS LAQFGYGSAG HRPAEQFGAA AAGFSFGMLP RSIATPAPSP AIAVPAMQGY  540
PGLVLPRGEM KVNLLPQSGN AGAAASQQLM GRLPKQHPQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-108	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G20430.1