PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G17060.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 416aa MW: 45212.4 Da PI: 5.3252

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G17060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36	1.7e-11	55	111	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g+ OGLUM08G17060.1 55 AFRGVTRHRWTGRFEAHLWDkNTWNEsQSKKGRQGAYDGEEAAARAYDLAALKYWGH 111 58****************77779888877777999999************997 PP
2	AP2	48.1	2.9e-15	153	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I + g +k+ +lg++ t eeAa a++ a+ + +g OGLUM08G17060.1 153 SKYRGVARHHHNGKWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDIAAIEHRG 204 89**99******99966...3.6********************99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MAKRRSNGET AAASSDDSSS GVCGGGGGGE VEPRRRQKRP RRSAPRDCPS QRSSAFRGVT 60 RHRWTGRFEA HLWDKNTWNE SQSKKGRQGA YDGEEAAARA YDLAALKYWG HDTVLNFPLS 120 TYDEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL 180 YLGTYATQEE AAVAYDIAAI EHRGLNAVTN FDINLYIRWY HGSCRSSSAA AATTIDDDDF 240 AEAIAAALQG VDEQPSSSPA TTRQLQTADD DDDDLVAQLP PQLRPLARAA STSPIGLLLR 300 SPKFKEIIEQ AAAAAASSSG SSSSSSTDSP SSSSSSSLSP SPLPSPPPQQ QPTVPKDDQY 360 NVDMSSVAAA RCSFPDDVQT YFGLDDDGFG YPEVDTFLFG DLGAYAAPMF QFELDV

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MAKRRSNGET AAASSDDSSS GVCGGGGGGE VEPRRRQKRP RRSAPRDCPS QRSSAFRGVT  60
RHRWTGRFEA HLWDKNTWNE SQSKKGRQGA YDGEEAAARA YDLAALKYWG HDTVLNFPLS  120
TYDEELKEME GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGKWEAR IGRVFGNKYL  180
YLGTYATQEE AAVAYDIAAI EHRGLNAVTN FDINLYIRWY HGSCRSSSAA AATTIDDDDF  240
AEAIAAALQG VDEQPSSSPA TTRQLQTADD DDDDLVAQLP PQLRPLARAA STSPIGLLLR  300
SPKFKEIIEQ AAAAAASSSG SSSSSSTDSP SSSSSSSLSP SPLPSPPPQQ QPTVPKDDQY  360
NVDMSSVAAA RCSFPDDVQT YFGLDDDGFG YPEVDTFLFG DLGAYAAPMF QFELDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	3e-89	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G17060.1