PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G05950.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 192aa    MW: 20582.3 Da    PI: 10.1618
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G05950.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77e-3282137258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      ep+YVNa+Qy++Il+RRq+Rak+e+e+k  +k rkpylheSRh hAl+R+RgsgGrF
  OGLUM08G05950.1  82 EPIYVNARQYHGILRRRQSRAKAESENKA-NKIRKPYLHESRHLHALKRARGSGGRF 137
                      8****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MKPDGETQLR PTAAGHPDPG LGTSSAEYVA PVGPATAPVA YPYIGTYYGG IYGAYSGQPL  60
VNAALMAMPP HSVPLVTDAV VEPIYVNARQ YHGILRRRQS RAKAESENKA NKIRKPYLHE  120
SRHLHALKRA RGSGGRFLNS KAVEGKQDTK SVDKKDGAVP SEKRDNKLAN NIIKLENSSP  180
TTQPGAVASD VV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.13e-36NF-YA family protein