PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G03020.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 340aa    MW: 36054.9 Da    PI: 10.3857
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G03020.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-14108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  OGLUM08G03020.1 108 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 152
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MPQDSRPAAM RLFGVTISPP PPPPEPEPEP DPSDPRDPSP RPAREDAMRK CKSMGNLAAA  60
AAAASSAAAG GGGAGDAGGS GDGYLSDGGL LLSSGKRRRA QERKKAVPWT EEEHRTFLAG  120
LEKLGKGDWR GISKNFVTTR TPTQVASHAQ KYFLRQTNPN KKKRRSSLFD MMATDMSPAP  180
NCPVLPPSMG KLHDMVAMTK QLQNSSLEGV SSSSTVNLAP QVARDLPPPI PSFKATNVDS  240
SLSKMNHMDG FLRAPMLFRP IPRIAEGASS STPATASIAD LEFQANLTAC SNALFASPRR  300
KPKKADPPAE KDLDLTVAPP SQQTRASISS QNAVGVIQVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-37MYB_related family protein