PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G01180.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 400aa MW: 42459.2 Da PI: 6.9338

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G01180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.7e-52	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ OGLUM08G01180.1 11 VPPGFRFHPTEEELLNYYLRKKVASEQIDL-DVIRDVDLNKLEPWDIQErcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103 69**************************.9***********963444443456******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +g++ktLvfykgrap+g+k+dW+mheyrl OGLUM08G01180.1 104 IYN-AVHRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 .8899**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEQIDL DVIRDVDLNK LEPWDIQERC 60 KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVHR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DPATDTAAAT PTVTSAAAAA AAMAAAADGG QEDGWVVCRV 180 FKKKHHHKEA GGGGGKHGGD GSAGAKAAHA YSSSDDALDQ ILQYMGRSCK QEHELPSPQA 240 SGGGGAGAGS RPASRYLRPI DTVLGGHGFM KLPPLESPSA ATALSSTPST GGDAASSAAA 300 AAADHLLLHH HHRMDWAMMD RLVASHLNGA NSDAPDDQLC FDAADDDGLA YYSAAATRLL 360 GGANAGTDDD LWSFARSAAP PPPPPPPSSA TPERLSHVAL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEQIDL DVIRDVDLNK LEPWDIQERC  60
KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVHR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DPATDTAAAT PTVTSAAAAA AAMAAAADGG QEDGWVVCRV  180
FKKKHHHKEA GGGGGKHGGD GSAGAKAAHA YSSSDDALDQ ILQYMGRSCK QEHELPSPQA  240
SGGGGAGAGS RPASRYLRPI DTVLGGHGFM KLPPLESPSA ATALSSTPST GGDAASSAAA  300
AAADHLLLHH HHRMDWAMMD RLVASHLNGA NSDAPDDQLC FDAADDDGLA YYSAAATRLL  360
GGANAGTDDD LWSFARSAAP PPPPPPPSSA TPERLSHVAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	8e-88	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G01180.1