PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G23080.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 265aa    MW: 29661.2 Da    PI: 7.3047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G23080.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-053676145
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45
                     +r  ++erE+  Rd+ N+ f+eL  ll ++     + + Ka +L 
  OGLUM07G23080.1 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLG 76
                     68899**********************996....34455555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MVPRDRVNAA AAGGGGDGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN  60
LLEPDRQNNG KACVLGETTR ILKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML  120
RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQQ  180
PVIIEQHYAA TPRELQLFPE SATSEDSEPS QEHGISDHVT RPQARYPTPT ATLPVNLFPV  240
FPGRQDQQCS SGTSGTNEED RIGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.22e-35bHLH family protein