PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G21090.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 321aa MW: 34037.6 Da PI: 5.4093

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G21090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F ++ + H+r+H OGLUM07G21090.1 110 FPCHLCHKEFGSRKAVHGHMRVH 132 89********************6 PP
2	zf-C2H2	11.6	0.00085	214	236	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk +++ L H r+H OGLUM07G21090.1 214 HPCNVCGKEYPTGVALGGHKRKH 236 78*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MEGKSSSRHA DPLEEVEMNS ASETEDDDDC RYVIQSRRDN DNDDEEGMRP ATACKRRRRL 60 DDILALLPSP PTLSTSSGSE GTISDRDHGG DVIRAGDDAD PVAARQEASF PCHLCHKEFG 120 SRKAVHGHMR VHHAENEKEP PPPPPAAMPV LPQARLPAPG ASRSGGPYKC KYEGCNMEYK 180 THQGLGGHVA GHINRDKMAT ASGSGGAGKP EGKHPCNVCG KEYPTGVALG GHKRKHYRKD 240 LDLTLSLAPP GELAAPPTPA PAPAAIAAVE AEAEVAEDGD GGEPVPTTPS TGARRNVVVR 300 IWGVDVEKPV DDVEEQDGGS N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	60	KRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46090.1	4e-12	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G21090.1