PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G46090.1 | ||||||||
Common Name | F12M12.60, ZAT7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18359.2 Da PI: 9.2526 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H AT3G46090.1 86 HPCPICGVKFPMGQALGGHMRRH 108 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.96E-5 | 36 | 63 | No hit | No description |
Pfam | PF13912 | 8.6E-12 | 39 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.995 | 40 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.1E-6 | 84 | 113 | No hit | No description |
Pfam | PF13912 | 1.1E-10 | 86 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.058 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0080134 | Biological Process | regulation of response to stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MVARSEEIVI VEEDTTAKCL MLLSRVGECG GGCGGDERVF RCKTCLKEFS SFQALGGHRA 60 SHKKLINSDN PSLLGSLSNK KTKTSHPCPI CGVKFPMGQA LGGHMRRHRN EKVSGSLVTR 120 SFLPETTTVT ALKKFSSGKR VACLDLDLDS MESLVNWKLE LGRTISWS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.19763 | 0.0 | root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT3G46090 | |||||
AtGenExpress | AT3G46090 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00041 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G46090.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT5G59820 (A) |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q42453 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G46090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL355775 | 0.0 | AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12. | |||
GenBank | BT024870 | 0.0 | BT024870.1 Arabidopsis thaliana At3g46090 gene, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | HQ698308 | 0.0 | HQ698308.1 Arabidopsis thaliana ecotype Landsberg erecta chromosome 3 genomic sequence. | |||
GenBank | X98676 | 0.0 | X98676.1 A.thaliana mRNA for ZAT7 protein. | |||
GenBank | X98677 | 0.0 | X98677.1 A.thaliana zat7 gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_190195.1 | 1e-120 | C2H2 and C2HC zinc fingers superfamily protein | ||||
Swissprot | Q42453 | 1e-122 | ZAT7_ARATH; Zinc finger protein ZAT7 | ||||
TrEMBL | A0A178VI57 | 1e-119 | A0A178VI57_ARATH; ZAT7 | ||||
STRING | AT3G46090.1 | 1e-120 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 | Representative plant | OGRP131 | 15 | 149 |
Link Out ? help Back to Top | |
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Phytozome | AT3G46090.1 |
Entrez Gene | 823752 |
iHOP | AT3G46090 |
wikigenes | AT3G46090 |