PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM07G20210.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 602aa    MW: 64650.3 Da    PI: 5.6196
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM07G20210.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.62.1e-961936012374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lLlecA+ v+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+
  OGLUM07G20210.1 193 SQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFG 285
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgv 174
                      h++aN aIle++ +         +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gv
  OGLUM07G20210.1 286 HVAANGAILESFLEVaaaassetQRFHILDLSNTFCTQWPTLLEALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGV 379
                      **********8754434455567999************************8889**********988889999999****************** PP

             GRAS 175 pfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse............ 251
                      pf+f++++++ +l++l+l++L++++     alaVn+v +l  ++  ++  + +rd++   +++l P+vv+vve+ead+   +            
  OGLUM07G20210.1 380 PFRFRAVHHSgDLAELDLDALDLREggaTTALAVNCVNSLRGVV--PGRAR-RRDAFAASLRRLDPRVVTVVEEEADLvA-Sdpdassateegg 469
                      *******8888**************888889************9..55555.59***********************954.44899******** PP

             GRAS 252 ....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                           Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++ll
  OGLUM07G20210.1 470 dteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLL 562
                      *****************************************.**************************************************** PP

             GRAS 342 rkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      r++  +g+++ e         + ++l Wk++pLv++SaWr
  OGLUM07G20210.1 563 RRYR-EGWSMREAgtddsaaGAGVFLAWKEQPLVWASAWR 601
                      ****.88888866666666455566**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    
MDTLFRLVSL QAASEQQQQQ QQSASYNSRS TTSSGSRSSS HQTNASYSYY HHSSNSGGGG  60
GGGGGYYYGG QQPPPSQYYY LEPYQEECGN APHHQLYMDE DFSSSSSSRH FHHGAPVQQQ  120
QPPASSTPTG TAPTPPLSTS STAAGAGHGL FEAADLSFPP DLNLDFSSPA SSSGGGTASS  180
GAVGGGGGGR WASQLLLECA RSVAARDSQR VQQLMWMLNE LASPYGDVEQ KLASYFLQGL  240
FARLTASGPR TLRTLAAASD RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEV  300
AAAASSETQR FHILDLSNTF CTQWPTLLEA LATRSADETP HLSITTVVSA APSAPTAAVQ  360
RVMREIGQRM EKFARLMGVP FRFRAVHHSG DLAELDLDAL DLREGGATTA LAVNCVNSLR  420
GVVPGRARRR DAFAASLRRL DPRVVTVVEE EADLVASDPD ASSATEEGGD TEAAFLKVFG  480
EGLRFFSAYM DSLEESFPKT SNERLALERG AGRAIVDLVS CPASESMERR ETAASWARRM  540
RSAGFSPVAF SEDVADDVRS LLRRYREGWS MREAGTDDSA AGAGVFLAWK EQPLVWASAW  600
RP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-144GRAS family protein