PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM07G07330.5

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 409aa MW: 44724 Da PI: 7.6062

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM07G07330.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.5	2.9e-07	121	142	1	22
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + OGLUM07G07330.5 121 SQYRGVTFYRRTGRWESHIWAY 142 78*****************984 PP
2	AP2	42.6	1.5e-13	220	270	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g OGLUM07G07330.5 220 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 270 89******.7**...5...334336******99********99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSP PVMTRQLFPS 60 PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPVGGK KSRRGPRSRS 120 SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQV VWNIVQLSCS 180 KGRFIHRPVM VYDGLMRNWT KEEFVHILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQL 240 LGKKYIYLGL FDSEIEAARA YDRAAIRFNG REAVTNFDPS SYDGDVLPET DNEVVDGDII 300 DLNLRISQPN VHELKSDGTL TGFQLNCDSP EASSSVVTQE VPMEKRPELG PQSFPTSWSW 360 QMQGSPLPLL PTAASSGFST GTVADSARVP SSRPHPFPGH HQFYFPPTA

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MVLDLNVESP GGSAATSSSS TPPPPPDGGG GGYFRFDLLG GSPDEDGCSP PVMTRQLFPS  60
PSAVVALAGD GSSTPPPTMP TPAAAGEGPW PRRAADLGVA QSQRSPVGGK KSRRGPRSRS  120
SQYRGVTFYR RTGRWESHIW AYDRAAIKFR GLDADINFNL NDYEDDLKQV VWNIVQLSCS  180
KGRFIHRPVM VYDGLMRNWT KEEFVHILRR QSTGFARGSS KYRGVTLHKC GRWEARMGQL  240
LGKKYIYLGL FDSEIEAARA YDRAAIRFNG REAVTNFDPS SYDGDVLPET DNEVVDGDII  300
DLNLRISQPN VHELKSDGTL TGFQLNCDSP EASSSVVTQE VPMEKRPELG PQSFPTSWSW  360
QMQGSPLPLL PTAASSGFST GTVADSARVP SSRPHPFPGH HQFYFPPTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	7e-70	AP2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM07G07330.5